View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10518_low_1 (Length: 423)
Name: NF10518_low_1
Description: NF10518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10518_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 35117049 - 35117423
Alignment:
| Q |
18 |
gtcatgaaccccgtttgtaacaattcccggcatctttaattctctcagaggatccagaatccctgtgacaacaaatatcaaacacatgatctacaaaata |
117 |
Q |
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| T |
35117049 |
gtcatgaaccccgtttgtaacaattcccggcatctttaattctctcagaggatccagaatccctgtgacaacaaatatcaaacacatgatctacaaaata |
35117148 |
T |
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| Q |
118 |
aacaaaacccaccacagatccaacaaggagaaggcgaaaagnnnnnnnnnttgtatttttggataactataattcattttatgctttatataacataaca |
217 |
Q |
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| T |
35117149 |
aacaaaacccaccacagatccaacaaggagaaggcgaaaa---aaaaaatttgtatttttggataactataattcattttatgctttatataacataaca |
35117245 |
T |
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| Q |
218 |
aagacattgatgaatgaaatgaaacagataacatttgatgaaatggtaacaaaaaacagtaaatttatgcgttttgctattgaaataacgaagatacgat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35117246 |
aagacattgatgaatgaaatgaaacagataacatttgatgaaatggtaacaaaaaacagtaaatttatgcgttttgctattgaaataacgaagatacaat |
35117345 |
T |
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| Q |
318 |
aatgtttacaaaactaatttcatttcatagagtatagattatacaaatcaagtcataaaccataattttcaatagtca |
395 |
Q |
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| T |
35117346 |
aatgtttacaaaactaatttcatttcatagattatagattatacagatcaagtcataaaccataattttcaatagtca |
35117423 |
T |
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