View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10518_low_10 (Length: 314)
Name: NF10518_low_10
Description: NF10518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10518_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 25242663 - 25242960
Alignment:
| Q |
11 |
cagagactaatcagactatgtaaggccaaaaaattcccaacaacctttcctaaatcccatcctattctctccatatataaaaacatcaatcatctctctt |
110 |
Q |
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| T |
25242663 |
cagagactaatcagactatgtaaggccaaaaaattcccaacaacctttcctaaatcccatcctatcctctccatatat--aaacatcaatcatctctcct |
25242760 |
T |
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| Q |
111 |
taaacttcaaaccaaaacccaattatatata-----------tccctaaacaacacaaattcacacaaaccttacaacaataattatagtaccatacaca |
199 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25242761 |
taaacttcaaaccaaaacccaattatatatattgcttaaagttccctacacaacacaaattcacacaaaccttacaacaataattatagtaccatacaca |
25242860 |
T |
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| Q |
200 |
catttcattatgatggtggaagttgatacaaatacacttcctcnnnnnnnnacccttgcagctgcattatttgcatacttattatggttccatttacttg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25242861 |
gatttcattatgatggtggaagttgatacaaatacacttcctcttttttttacccttgcagctgcattatttgcatacttattatggttccatttacttg |
25242960 |
T |
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