View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10518_low_11 (Length: 300)
Name: NF10518_low_11
Description: NF10518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10518_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 43549623 - 43549905
Alignment:
| Q |
1 |
aagagtgacaaacaatcaccaagatcatcttcaagttcatacacaatagtacgaggtaatacactaataccatcatcttctttcttaatttcatgnnnnn |
100 |
Q |
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| T |
43549623 |
aagagtgacaaacaatcaccaagatcatcttcaagttcatacacaatagtacgaggtaatacactaataccatcatcttctttcttaatttcatgttttt |
43549722 |
T |
|
| Q |
101 |
nnatcttttaaacaataaa-tttaattcatatatatctctgcagtatcagttttcagttttccagcttcagtttttgaagtataagaaagaaagtaaagt |
199 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43549723 |
t-atcttttaaacaataaaatttaattcatatatatctctgcagtatcagttttcagtttcccagcttcagtttttgaagtataagaaagaaagtaaagt |
43549821 |
T |
|
| Q |
200 |
ggttagctagtgttgaatgatgaaaagtcctaaccctatccctaaactggaagaggaaaagagccttgaagaagagctgttgat |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43549822 |
ggttagctagtgttgaatgatgaaaagtcctaaccctagccctaaactggaagaggaaaagagccttgaagaagagctgttgat |
43549905 |
T |
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