View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10518_low_12 (Length: 290)
Name: NF10518_low_12
Description: NF10518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10518_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 47310230 - 47309947
Alignment:
| Q |
1 |
tcactgcctctaataataccacaacaactaaactatattccctcccctacaagcaccatccgtatttaaattcacccaattatcttgcggaggcctccac |
100 |
Q |
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| T |
47310230 |
tcaccgcctctaataataccacaacaactaaactatattccctcccctacaagcaccatccgtatttaaattcacccaattatcttgcggaggcctccac |
47310131 |
T |
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| Q |
101 |
ctaaggaaacctatcacacgttggaaataattttgttcgtcattcttgcttgattgtaatctactgaaatctttagaacat---------gattaattgg |
191 |
Q |
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| T |
47310130 |
ctaaggaaacctatcacacgttggaaataattttgttcgtcattcttgcttgattgtaatctaatgaaatctttagaacatgattcacatgattaattgg |
47310031 |
T |
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| Q |
192 |
tctaacaaaattatgtgcatgcaactccttattcctccacgtccacaaacaatgacgagctatccccaaatatctctccaatct |
275 |
Q |
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| T |
47310030 |
tctaacaaaattatgttcatgcaactccttattgctccacgtccacaaacaatgacgagctatccccaaatatctctccaatct |
47309947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 21310297 - 21310360
Alignment:
| Q |
182 |
gattaattggtctaacaaaattatgtgcatgcaactccttattcctccacgtccacaaacaatg |
245 |
Q |
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| T |
21310297 |
gattaattggtctaacaaaatcattttcatgcaactcctaattcctccatgtccacaaacaatg |
21310360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 50564736 - 50564480
Alignment:
| Q |
1 |
tcactgcctctaataataccacaacaactaaactatattccctcccctacaagcaccatccgtatttaaattcacccaattatcttgcggaggcctccac |
100 |
Q |
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| T |
50564736 |
tcactccctctaataataccaccacaactag-ctatatttccacccttgcacgcaccatccctatttaacttcacccaattaac---cggagacctccac |
50564641 |
T |
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| Q |
101 |
ctaaggaaacctatcacac-------gttggaaataattttgttcgtcattcttgcttgattgtaatctactgaaatctttagaacat---------gat |
184 |
Q |
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| T |
50564640 |
ctaatgaaatctatcacacattggctattggaagtaatttggttagccgttcttgcttgataataatcttccgatagcttcaaaacatgattcgaaggat |
50564541 |
T |
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| Q |
185 |
taattggtctaacaaaattatgtgcatgcaactccttattcctccacgtccacaaacaatg |
245 |
Q |
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| T |
50564540 |
tagttggtctaacaaatttattttcatgcaactccttattcctccatgtcgacaaacaatg |
50564480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 45089281 - 45089346
Alignment:
| Q |
182 |
gattaattggtctaacaaaattatgtgcatgcaactccttattcctccacgtccacaaacaatgac |
247 |
Q |
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| T |
45089281 |
gattaattcatctaacaaaattgcattcatgcaactccttattcctccacgttcataaacaatgac |
45089346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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