View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10518_low_13 (Length: 288)
Name: NF10518_low_13
Description: NF10518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10518_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 24572832 - 24573102
Alignment:
| Q |
18 |
aatatgagccatgatgatgaagagattaaagtctcaaaagtaaatggatnnnnnnntgatgaaaaatttcttgagattctcaaatgtgacaatgacagac |
117 |
Q |
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| T |
24572832 |
aatatgagccatgatgatgaagagattaaagtctcaaaagtaaatggataaaaaaatgatgaaaaatttcttgagattctcaaatgtgacaatgacagac |
24572931 |
T |
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| Q |
118 |
ccgcacgagagttccttcattggattctctttgagatgccggtctgagctcagacatactgagaaccacaaatctgacaaaatcatttcaccaccttaat |
217 |
Q |
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| T |
24572932 |
ccgcacgagagttccttcattggattctctttgagatgccggtgtgagctcagacatactgagaaccacaaatctgacaaaatcatttcaccaccttaat |
24573031 |
T |
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| Q |
218 |
aatctcatttatccctatcttaataattcagaaaaaaccaaatacacccttcaactctctgcttctccact |
288 |
Q |
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| T |
24573032 |
aatctcatttatccctatcttaataattcagaaaaaaccaaatacacccttcaactctttgattttccact |
24573102 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 42374927 - 42374964
Alignment:
| Q |
109 |
atgacagacccgcacgagagttccttcattggattctc |
146 |
Q |
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| T |
42374927 |
atgacagacccgcacgagagtttcttcattggattctc |
42374964 |
T |
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