View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10518_low_16 (Length: 261)

Name: NF10518_low_16
Description: NF10518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10518_low_16
NF10518_low_16
[»] chr3 (2 HSPs)
chr3 (18-246)||(37463311-37463539)
chr3 (68-160)||(39428718-39428809)
[»] chr2 (23 HSPs)
chr2 (48-199)||(9316844-9316995)
chr2 (21-199)||(8572681-8572858)
chr2 (48-199)||(9060277-9060428)
chr2 (39-180)||(10336621-10336762)
chr2 (23-158)||(9321785-9321920)
chr2 (27-179)||(10372680-10372832)
chr2 (39-174)||(9275333-9275468)
chr2 (48-199)||(9357935-9358086)
chr2 (39-199)||(7114827-7114984)
chr2 (21-179)||(9292720-9292878)
chr2 (48-179)||(10348622-10348753)
chr2 (49-180)||(12018112-12018243)
chr2 (48-199)||(9329418-9329569)
chr2 (28-179)||(10353944-10354095)
chr2 (40-180)||(9283372-9283512)
chr2 (38-170)||(12005373-12005505)
chr2 (49-170)||(12011801-12011922)
chr2 (49-128)||(9365415-9365494)
chr2 (58-158)||(17565334-17565434)
chr2 (39-125)||(14551130-14551215)
chr2 (49-158)||(7612716-7612825)
chr2 (53-133)||(11986770-11986850)
chr2 (96-155)||(8578748-8578807)
[»] scaffold0667 (1 HSPs)
scaffold0667 (39-199)||(5269-5429)
[»] chr4 (2 HSPs)
chr4 (21-179)||(26575671-26575829)
chr4 (39-125)||(561980-562066)
[»] chr8 (1 HSPs)
chr8 (21-176)||(41965924-41966079)
[»] chr5 (1 HSPs)
chr5 (50-160)||(36225571-36225681)
[»] chr1 (4 HSPs)
chr1 (21-180)||(29452549-29452708)
chr1 (21-180)||(29424006-29424165)
chr1 (38-180)||(29467023-29467165)
chr1 (21-180)||(29442557-29442716)
[»] chr7 (1 HSPs)
chr7 (49-143)||(45238749-45238843)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 37463311 - 37463539
Alignment:
Q  18 gtttcgaatgattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37463311 gtttcgaatgattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcgg 37463410  T
Q  118 aatcggagaagtgattctactggtaaacgggagaggatttcggcgagtatttccggcggaagaccgtcatccgccattggaatcggtaggatgggtcagg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37463411 aatcggagaagtgattctactggtaaacgggagaggatttcggcgagtatttccggcggaagaccgtcatccgccattggaatcggtaggatgggtcagg 37463510  T
Q  218 gaggttctagggtttttagggtttttcgt 246  Q
    |||||||||||||||||||||||||||||    
T  37463511 gaggttctagggtttttagggtttttcgt 37463539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 39428718 - 39428809
Alignment:
Q  68 tgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgggagaggatttcgg 160  Q
    |||||||||| |||| |||||| ||||||| | |||||||||||||||||||| |||| || ||||  || ||||| ||||||||||||||||    
T  39428718 tgaagttgtgggaat-gattaaggatttaactcattttgaagttgatcggaattggaggagggattgcaccggtaagcgggagaggatttcgg 39428809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 48 - 199
Target Start/End: Original strand, 9316844 - 9316995
Alignment:
Q  48 atttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgg 147  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||    
T  9316844 atttttgaggtgaaggttgatgaagttgtgagaatctattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattttactggtaagtgg 9316943  T
Q  148 gagaggatttcggcgagtatttccggcggaagaccgtcatccgccattggaa 199  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  9316944 gagaagatttcggcgagtatttccggcggaagaccgtcagccgccattggaa 9316995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 8572858 - 8572681
Alignment:
Q  21 tcgaatgattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaat 120  Q
    ||||||||||| |||  ||||||||| ||||||||| ||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  8572858 tcgaatgattaaggaacgattgagggaatttttgaggtgaaggttggtgaagttgtgggaatcgattatagatttaagtgattttgaagttgatcggaat 8572759  T
Q  121 cggagaagtgattctactggtaaacgggagaggatttcggcgagtatttccggcggaagaccgtcatccgccattggaa 199  Q
    ||||||||||||| ||||||||  ||||||| |||||| | || |||||||| ||||||| | ||| ||||||||||||    
T  8572758 cggagaagtgatt-tactggtatgcgggagaagatttcagtgactatttccgacggaagaacatcacccgccattggaa 8572681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 9060428 - 9060277
Alignment:
Q  48 atttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgg 147  Q
    ||||||||| | ||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  || ||||| |||    
T  9060428 atttttgaggtaaaggttagtgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatcggaatcggagaagtgattgaaccggtaagcgg 9060329  T
Q  148 gagaggatttcggcgagtatttccggcggaagaccgtcatccgccattggaa 199  Q
    |||| ||||||||| |||||||||||||||||| | ||| ||||||||||||    
T  9060328 gagaagatttcggcaagtatttccggcggaagaacatcagccgccattggaa 9060277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 39 - 180
Target Start/End: Original strand, 10336621 - 10336762
Alignment:
Q  39 attgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctact 138  Q
    |||||||| |||||  || |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||     
T  10336621 attgagggaattttgaaggtgaaggttgatgaatttgtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttacc 10336720  T
Q  139 ggtaaacgggagaggatttcggcgagtatttccggcggaaga 180  Q
    ||||||||||||| |||||||| ||| |||||||||||||||    
T  10336721 ggtaaacgggagaagatttcggagagaatttccggcggaaga 10336762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 9321785 - 9321920
Alignment:
Q  23 gaatgattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcg 122  Q
    ||||||||| |||| || |||||| |||||||||||||||||||||||||| ||||||||||||||  |||||||||||||| ||||||||||||||| |    
T  9321785 gaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgagaatcgattatggatttaagtgatttagaagttgatcggaattg 9321884  T
Q  123 gagaagtgattctactggtaaacgggagaggatttc 158  Q
    ||||||||||| ||| ||||| ||||||||||||||    
T  9321885 gagaagtgattttaccggtaagcgggagaggatttc 9321920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 27 - 179
Target Start/End: Original strand, 10372680 - 10372832
Alignment:
Q  27 gattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggaga 126  Q
    ||||| |||| ||||||||| ||||| ||| |||||||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  10372680 gattaaggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaatgatttaaatgattttgaagttgatcggaatcggaga 10372779  T
Q  127 agtgattctactggtaaacgggagaggatttcggcgagtatttccggcggaag 179  Q
    ||||||| ||| ||||| ||||||| || ||||||||| || || ||||||||    
T  10372780 agtgattttaccggtaagcgggagaagacttcggcgagaatatcaggcggaag 10372832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 39 - 174
Target Start/End: Original strand, 9275333 - 9275468
Alignment:
Q  39 attgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctact 138  Q
    |||||||| |||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||  |||||||||||| ||||||||||| ||||    
T  9275333 attgagggaatttttgagatgaaggttgatgaagttgtgggaatcaatcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtact 9275432  T
Q  139 ggtaaacgggagaggatttcggcgagtatttccggc 174  Q
    ||||| ||||||| |||||||||  |||||||||||    
T  9275433 ggtaaccgggagaagatttcggcaggtatttccggc 9275468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 48 - 199
Target Start/End: Original strand, 9357935 - 9358086
Alignment:
Q  48 atttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgg 147  Q
    ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||  || ||||||||||||| ||||||||| |||    
T  9357935 atttttgaggtgaaggtttatgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 9358034  T
Q  148 gagaggatttcggcgagtatttccggcggaagaccgtcatccgccattggaa 199  Q
     | |  |||| ||||||||||||||||||||| | |||| | ||||||||||    
T  9358035 aacaaaattttggcgagtatttccggcggaaggcggtcaacagccattggaa 9358086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 7114984 - 7114827
Alignment:
Q  39 attgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctact 138  Q
    ||||| || |||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||  ||||    
T  7114984 attgaaggaatttttaagatgaaggttgatgaatttgtgggaatcgattaaggatttaagtgattttgaagttgatcggaatcgaagaagtgatcgtact 7114885  T
Q  139 ggtaaacgggagaggatttcggcgagtatttccggcggaagaccgtcatccgccattggaa 199  Q
    ||||  || |||| ||||||||  ||||||||||||||||||   ||| ||||||||||||    
T  7114884 ggtaggcgagagaagatttcggatagtatttccggcggaaga---tcagccgccattggaa 7114827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 9292720 - 9292878
Alignment:
Q  21 tcgaatgattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaat 120  Q
    ||||| ||||| |||| | ||||||| ||||||||| ||||||||  ||||| |||||||||||||||  |||||||||||||||||| |||||||||||    
T  9292720 tcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaat 9292819  T
Q  121 cggagaagtgattctactggtaaacgggagaggatttcggcgagtatttccggcggaag 179  Q
    | ||||||||||| ||||||||  ||||||| ||||||||||| |||||| ||||||||    
T  9292820 ctgagaagtgattttactggtacgcgggagaagatttcggcgactatttctggcggaag 9292878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 179
Target Start/End: Original strand, 10348622 - 10348753
Alignment:
Q  48 atttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgg 147  Q
    |||||| || |||||||||||||| ||| | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| |||    
T  10348622 attttttaggtgaaggttgatgaatttgagggaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgg 10348721  T
Q  148 gagaggatttcggcgagtatttccggcggaag 179  Q
    |||| |||||||||||| || |||||||||||    
T  10348722 gagaagatttcggcgagaatatccggcggaag 10348753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 180
Target Start/End: Complemental strand, 12018243 - 12018112
Alignment:
Q  49 tttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacggg 148  Q
    |||||||| ||||| ||| |||||||||||||||||||||  ||||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||    
T  12018243 tttttgagttgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcgaagaagtgattttactggtaagcggg 12018144  T
Q  149 agaggatttcggcgagtatttccggcggaaga 180  Q
    ||| ||||||||||||||| || | |||||||    
T  12018143 agaagatttcggcgagtatgtctgacggaaga 12018112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 48 - 199
Target Start/End: Original strand, 9329418 - 9329569
Alignment:
Q  48 atttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgg 147  Q
    ||||||||| ||||||||  |||||||||| ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| |||    
T  9329418 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 9329517  T
Q  148 gagaggatttcggcgagtatttccggcggaagaccgtcatccgccattggaa 199  Q
    ||||||||||| |  |  | ||||||| ||||| | ||| ||||||||||||    
T  9329518 gagaggatttccgttaacaattccggcagaagaacatcacccgccattggaa 9329569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 28 - 179
Target Start/End: Original strand, 10353944 - 10354095
Alignment:
Q  28 attacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaa 127  Q
    |||| |||||||||| ||| |||| |||| |||||||||||||| ||||  ||||||||||  ||||||| ||||||||||||||||||||||| |||||    
T  10353944 attaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaa 10354043  T
Q  128 gtgattctactggtaaacgggagaggatttcggcgagtatttccggcggaag 179  Q
    |||||  ||| ||||| ||||| |||||||||| ||| |||||||| |||||    
T  10354044 gtgatattaccggtaagcgggaaaggatttcggtgagaatttccggtggaag 10354095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 40 - 180
Target Start/End: Complemental strand, 9283512 - 9283372
Alignment:
Q  40 ttgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactg 139  Q
    ||||||| | ||||||| |||||||||||||| ||||||||||| ||||  |||  ||||||||| |||||||||||||||||||| |||||||  ||||    
T  9283512 ttgagggaacttttgaggtgaaggttgatgaatttgtgagaatctattagggatcgaagtgatttagaagttgatcggaatcggagtagtgatttaactg 9283413  T
Q  140 gtaaacgggagaggatttcggcgagtatttccggcggaaga 180  Q
    |||| | ||||| ||||||||| ||||| ||||||||||||    
T  9283412 gtaagcaggagaagatttcggcaagtatgtccggcggaaga 9283372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 12005505 - 12005373
Alignment:
Q  38 gattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctac 137  Q
    ||||||| | |||||| |||||||||||| |||||||||||||||||||||  |||||||| |||| ||||||||| ||||||||||||||||||| |      
T  12005505 gattgagagaattttttagatgaaggttggtgaagttgtgagaatcgattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtgg 12005406  T
Q  138 tggtaaacgggagaggatttcggcgagtatttc 170  Q
     ||||| ||||||| |||||||| |||||||||    
T  12005405 aggtaagcgggagaagatttcggtgagtatttc 12005373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 12011922 - 12011801
Alignment:
Q  49 tttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacggg 148  Q
    |||||||| ||||| ||| |||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| |    |||| ||||    
T  12011922 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcggagaagtgattgtggatgtaagcggg 12011823  T
Q  149 agaggatttcggcgagtatttc 170  Q
    ||| |||||||| |||||||||    
T  12011822 agaagatttcggtgagtatttc 12011801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 9365415 - 9365494
Alignment:
Q  49 tttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaag 128  Q
    ||||||||||| |||||| ||||| |||||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  9365415 tttttgagatggaggttggtgaaggtgtgagaatcgattatggatttaagtgattttgaggttgatcggaatcggagaag 9365494  T

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Target: chr2; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 17565434 - 17565334
Alignment:
Q  58 tgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgggagaggattt 157  Q
    ||||||||| ||||||| || ||||| |||||| ||||||||||||| || |||||||||| |||||| || |||| ||||||||| || ||||||||||    
T  17565434 tgaaggttggtgaagttatgggaatcaattaaaaatttaagtgatttcgacgttgatcggagtcggaggagggattgtactggtaagcgagagaggattt 17565335  T
Q  158 c 158  Q
    |    
T  17565334 c 17565334  T

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Target: chr2; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 14551130 - 14551215
Alignment:
Q  39 attgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggag 125  Q
    |||||||| |||||| || ||||| |||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||| ||||    
T  14551130 attgagggaattttt-aggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaagttgatcggaattggag 14551215  T

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Target: chr2; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 7612716 - 7612825
Alignment:
Q  49 tttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacggg 148  Q
    |||||||| ||||||||  |||||||||| ||||| ||||| |||||||| ||||| ||| |||||||||||||||| || | || ||| ||||| || |    
T  7612716 tttttgaggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcggaatcggaggagggtttgtaccggtaagcgag 7612815  T
Q  149 agaggatttc 158  Q
    ||||||||||    
T  7612816 agaggatttc 7612825  T

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Target: chr2; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 11986850 - 11986770
Alignment:
Q  53 tgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgatt 133  Q
    |||| ||||| ||| |||||||||||||||| ||||  |||||||| |||| ||||||||| |||||||||||||||||||    
T  11986850 tgaggtgaagattggtgaagttgtgagaatcaattatggatttaagcgattctgaagttgagcggaatcggagaagtgatt 11986770  T

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Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 8578807 - 8578748
Alignment:
Q  96 aagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgggagaggat 155  Q
    ||||||||| ||| ||||||||||||||||||| |||| ||| ||||| |||||||||||    
T  8578807 aagtgatttagaaattgatcggaatcggagaagggattgtaccggtaagcgggagaggat 8578748  T

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Target: scaffold0667 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 39 - 199
Target Start/End: Original strand, 5269 - 5429
Alignment:
Q  39 attgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctact 138  Q
    |||||||| ||||||| | |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||     
T  5269 attgagggaatttttgcggtgaaggttgatgaagttgtgagaatcgattatggatttaagtgattttgaagttgatcggaatcggagaagtgattttacc 5368  T
Q  139 ggtaaacgggagaggatttcggcgagtatttccggcggaagaccgtcatccgccattggaa 199  Q
    ||||| ||||||| |||||| |||||| | ||||||||||| | ||||  |||||||||||    
T  5369 ggtaagcgggagaagatttctgcgagtgtgtccggcggaaggcggtcagacgccattggaa 5429  T

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Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 26575671 - 26575829
Alignment:
Q  21 tcgaatgattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaat 120  Q
    ||||| ||||| |||| ||||| ||| |||| |||| |||||||||||||| ||||  |||||||||||  |||||||||||||||||||||||||||||    
T  26575671 tcgaaggattaaggatcgattgggggaatttctgaggtgaaggttgatgaatttgtaggaatcgattaagaatttaagtgattttgaagttgatcggaat 26575770  T
Q  121 cggagaagtgattctactggtaaacgggagaggatttcggcgagtatttccggcggaag 179  Q
    ||||||||||||  ||| ||||||||||||| |||||||| ||| |||||||| |||||    
T  26575771 cggagaagtgatattaccggtaaacgggagaagatttcggtgagaatttccggtggaag 26575829  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 561980 - 562066
Alignment:
Q  39 attgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggag 125  Q
    ||||||||  |||||||| ||||||||  |||||||||| ||||||||||  ||||||||  |||||||| || |||||||||||||    
T  561980 attgagggagtttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagccattttgaacttaatcggaatcggag 562066  T

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Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 41966079 - 41965924
Alignment:
Q  21 tcgaatgattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaat 120  Q
    ||||| ||||| |||| |||||||||  ||| |||| |||||||||||||||||||| ||||||||||| |||  ||||||||| || ||||||||||||    
T  41966079 tcgaaggattaaggatcgattgagggattttctgaggtgaaggttgatgaagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatcggaat 41965980  T
Q  121 cggagaagtgattctactggtaaacgggagaggatttcggcgagtatttccggcgg 176  Q
    ||||||| ||||| ||| |||||  |||||| |||||| ||||||||||| |||||    
T  41965979 cggagaactgattttaccggtaatagggagaagatttcagcgagtatttctggcgg 41965924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 36225571 - 36225681
Alignment:
Q  50 ttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacggga 149  Q
    ||||||| ||||| ||  |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||  ||| |||| |||||    
T  36225571 ttttgaggtgaagattagtgaagttgtgcgaatcgattaacgatttaagtgattttgaagttgatcggaatcggaggagggattgcactagtaagcggga 36225670  T
Q  150 gaggatttcgg 160  Q
    |||||||||||    
T  36225671 gaggatttcgg 36225681  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 29452708 - 29452549
Alignment:
Q  21 tcgaatgattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaat 120  Q
    ||||| ||||| |||  ||||||||| ||||| ||| ||||| |||||||||||||||||||||||||  |||| |||||||||||| ||||| ||||||    
T  29452708 tcgaaggattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaat 29452609  T
Q  121 cggagaagtgattctactggtaaacgggagaggatttcggcgagtatttccggcggaaga 180  Q
    ||||| || |||| ||| |||||  | ||||||||  |||  ||||| ||||||||||||    
T  29452608 cggaggagggattgtaccggtaacagagagaggataccggtaagtatctccggcggaaga 29452549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 29424006 - 29424165
Alignment:
Q  21 tcgaatgattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaat 120  Q
    ||||| ||||| |||  |||||| || ||| | ||| ||||| ||||||||| |||| |||||||||| ||||| |||||||||||| ||||| ||||||    
T  29424006 tcgaaggattaaggaacgattgaaggaattatggaggtgaagcttgatgaagctgtgggaatcgattagagattgaagtgattttgaggttgaacggaat 29424105  T
Q  121 cggagaagtgattctactggtaaacgggagaggatttcggcgagtatttccggcggaaga 180  Q
    ||||| || |||| ||| |||||  | ||||||||| ||| |||||| ||||||||||||    
T  29424106 cggaggagggattgtaccggtaacagagagaggattccggtgagtatctccggcggaaga 29424165  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 180
Target Start/End: Complemental strand, 29467165 - 29467023
Alignment:
Q  38 gattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctac 137  Q
    ||||||||| ||||  ||| ||||| |||||||||||||| ||||||||||  |||| |||||||||||| ||||| ||||||||||| || |||| |||    
T  29467165 gattgagggaatttcggaggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaggttgaacggaatcggaggagggattgtac 29467066  T
Q  138 tggtaaacgggagaggatttcggcgagtatttccggcggaaga 180  Q
     |||||  | |||| |||| ||| || ||||||||| ||||||    
T  29467065 cggtaacagagagatgattccggtgattatttccggaggaaga 29467023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 29442716 - 29442557
Alignment:
Q  21 tcgaatgattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaat 120  Q
    ||||| ||||| |||  ||||||||  ||||| ||| ||||| ||||||||||| || ||||||||||  |||| ||||||||| || ||||| ||||||    
T  29442716 tcgaaggattaaggaacgattgaggaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaat 29442617  T
Q  121 cggagaagtgattctactggtaaacgggagaggatttcggcgagtatttccggcggaaga 180  Q
    ||||| || |||| | | |||||  | ||||||||| |||  ||||| ||||||||||||    
T  29442616 cggaggagggattgtgccggtaacagagagaggattccggtaagtatctccggcggaaga 29442557  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 143
Target Start/End: Original strand, 45238749 - 45238843
Alignment:
Q  49 tttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaa 143  Q
    ||||||||||||||| || ||||||||| |  ||||||||||||   |||||| ||||||||||||||||||||||| || |||||||| |||||    
T  45238749 tttttgagatgaagggtggtgaagttgtaactatcgattaaagaaagaagtgagtttgaagttgatcggaatcggagtagggattctaccggtaa 45238843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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