View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10518_low_2 (Length: 405)
Name: NF10518_low_2
Description: NF10518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10518_low_2 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0496 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 405
Target Start/End: Complemental strand, 9196556 - 9196186
Alignment:
| Q |
17 |
attttgctttgcgcgagtaaagcaccagtcgttctaagctctaaaataccaaccttctttgtatgatgacctcaactatgttccgacttcggatcattga |
116 |
Q |
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| T |
9196556 |
attttgctttgcgcgagtaaagcattagtcgttctaagctttaaaataccaaccttctttgtatgatgacctcaactatgttccgacttcggatcattga |
9196457 |
T |
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| Q |
117 |
caaccatgtattccactatctatttttatggcatctgcaagactttttgacatcggtgtatcttctcctgttgcatcaagcaggaatttgcgttgcccta |
216 |
Q |
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| T |
9196456 |
caaccatgtattctactatctatctttatg-------------------acatccgtgtaacttctcctgttgcatcaagcaggaatttgcgttgctcta |
9196376 |
T |
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| Q |
217 |
aaattatggatttgagtgatatcatgaaccc-gtggcttggatatttgcagaacatggatttaaactgttcccatgcttcatatattgtctcgctcgaac |
315 |
Q |
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| T |
9196375 |
aaattatggatttgagtgatatcatgaaccctgtggcttggatatttgcagaacatggatttaaactgttcccatgcttcatataatgtctcactagaac |
9196276 |
T |
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| Q |
316 |
cttgagtaaaaacagcgattggcgtctttgcatcttgaattctactatgaggaaagaatcgtttgatgaacttgtcctccaaagtgttct |
405 |
Q |
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| T |
9196275 |
cttgagtaaaaacaacgattggcgtctttgcatcttgaattctactatgaggaaagaatcgtttgatgaacttgtcctccaaagtgttct |
9196186 |
T |
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Target: scaffold0496 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 8676 - 8616
Alignment:
| Q |
343 |
ttgcatcttgaattctactatgaggaaagaatcgtttgatgaacttgtcctccaaagtgtt |
403 |
Q |
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| T |
8676 |
ttgcatcttgaattctactttggggaaagaatggtttgatgaacttatcctccaaagtgtt |
8616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 400
Target Start/End: Complemental strand, 22108244 - 22108201
Alignment:
| Q |
357 |
ctactatgaggaaagaatcgtttgatgaacttgtcctccaaagt |
400 |
Q |
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| T |
22108244 |
ctactttgaggaaagaatcatttgatgaacttgtcctccaaagt |
22108201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 405
Target Start/End: Complemental strand, 19624970 - 19624916
Alignment:
| Q |
351 |
tgaattctactatgaggaaagaatcgtttgatgaacttgtcctccaaagtgttct |
405 |
Q |
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| T |
19624970 |
tgaattctactacgcggaaagaatcttttgatgaacttgtcctctagagtgttct |
19624916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 405
Target Start/End: Original strand, 15307413 - 15307455
Alignment:
| Q |
363 |
tgaggaaagaatcgtttgatgaacttgtcctccaaagtgttct |
405 |
Q |
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| T |
15307413 |
tgaggaaaaaattatttgatgaacttgtcctccaaagtgttct |
15307455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 404
Target Start/End: Original strand, 16549852 - 16549944
Alignment:
| Q |
312 |
gaaccttgagtaaaaacagcgattggcgtctttgcatcttgaattctactatgaggaaagaatcgtttgatgaacttgtcctccaaagtgttc |
404 |
Q |
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| T |
16549852 |
gaaccttaagtaaaaacaatgattggtgtattagcatcatgaattctgctacgtggaaataatcttttgataaatttatcttccaaagtgttc |
16549944 |
T |
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