View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10518_low_3 (Length: 403)
Name: NF10518_low_3
Description: NF10518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10518_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Complemental strand, 6968518 - 6968141
Alignment:
| Q |
17 |
atatcttctataacaacaactgacttactcgtgattccaatcaaaagtttccttaactcagcattatttttcacattggttaactcaatgtcataaatat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968518 |
atatcttctataacaacaactgacttactcgtgattccaatcaaaagtttccttaactcagcattatttttcacattggttaactcaatgtcataaatat |
6968419 |
T |
|
| Q |
117 |
catacttcaaaaaattagcaatagcagcaactagtgatgattttcctgttcctggaggaccataaagcaaatagcctctcttccaaggcttgccaatttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968418 |
catacttcaaaaaattagcaatagcagcaactagtgatgattttcctgttcctggaggaccataaagcaaatagcctctcttccaaggcttgccaatttt |
6968319 |
T |
|
| Q |
217 |
tgcataatactctttagccttactgaatgtaacaagatcatcaacaatctctttcttctttttaggactcattgcaattgtttcaaacgaagacggatgt |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968318 |
tgcataatactctttagccttactgaatgtaacaagatcatcaacaatctctttcttctttttaggactcattgcaattgtttcaaacgaagacggatgt |
6968219 |
T |
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| Q |
317 |
tcaaatatcacatgactccacttacctcccctttcatattcaccattacctgtgcaatttgtgtaaagctttctctgc |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968218 |
tcaaatatcacatgactccacttacctcccctttcatattcaccattacctgtgcaatttgtgtaaagctttctctgc |
6968141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 96 - 344
Target Start/End: Original strand, 1000533 - 1000780
Alignment:
| Q |
96 |
ttaactcaatgtcataaatatcatacttcaaaaaa-ttagcaatagcagcaactagtgatgattttcctgttcctggaggaccataaagcaaatagcctc |
194 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
1000533 |
ttaactcaatgtcataaatatcatacttcaaaaaaattagaaatggcagtaactagtgatgattttcctgttcctggaggaccatagaacaaatagccta |
1000632 |
T |
|
| Q |
195 |
tcttccaaggcttgccaatttttgcataatactctttagccttactgaatgtaacaagatcatcaacaatctctttcttctttttaggactcattgcaat |
294 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||| |
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| T |
1000633 |
tcttccaaggcttaccaatttttgcataatactctttagccttactgaatgtaacaagatcatcaacaatctatttcttc-ttttaggattcattgcaat |
1000731 |
T |
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| Q |
295 |
tgtttcaaacgaagacggatgttcaaatatcacatgactccacttacctc |
344 |
Q |
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||||||||| ||||| |||||||||||||| ||||||||||| ||||||| |
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| T |
1000732 |
tgtttcaaa-gaagatggatgttcaaatataacatgactccatttacctc |
1000780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 260
Target Start/End: Complemental strand, 6971189 - 6971087
Alignment:
| Q |
158 |
tttcctgttcctggaggaccataaagcaaatagcctctcttccaaggcttgccaatttttgcataatactctttagccttactgaatgtaacaagatcat |
257 |
Q |
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||||| || ||||||||||||||||| ||||| ||||| ||||||| | | |||||| ||||||| | || ||| ||||| ||||||| |||||||| |
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| T |
6971189 |
tttccagtccctggaggaccataaagtaaataacctcttttccaagcccttccaattcttgcatagaattcaccagctttactaaatgtaataagatcat |
6971090 |
T |
|
| Q |
258 |
caa |
260 |
Q |
| |
|
||| |
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|
| T |
6971089 |
caa |
6971087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 2177852 - 2177799
Alignment:
| Q |
21 |
cttctataacaacaactgacttactcgtgattccaatcaaaagtttccttaact |
74 |
Q |
| |
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|||| ||||||||||| || | ||| ||||||||||||||||||||||||||| |
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| T |
2177852 |
cttcaataacaacaaccgattcacttttgattccaatcaaaagtttccttaact |
2177799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 1800862 - 1800792
Alignment:
| Q |
155 |
gattttcctgttcctggaggaccataaagcaaatagcctctcttccaaggcttgccaatttttgcataata |
225 |
Q |
| |
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||||| ||||||||||||||||||||||| ||||| || | ||||||| ||| || |||||||||||||| |
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| T |
1800862 |
gatttacctgttcctggaggaccataaagtaaataaccgcgtttccaagccttaccgatttttgcataata |
1800792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 2833326 - 2833403
Alignment:
| Q |
155 |
gattttcctgttcctggaggaccataaagcaaatagcctctcttccaaggcttgccaatttttgcataatactcttta |
232 |
Q |
| |
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|||||||| |||||||||||||||||||| | ||| || | ||||||| ||| |||| ||| ||||||||||||||| |
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| T |
2833326 |
gattttccagttcctggaggaccataaagtagataaccacgtttccaagcctttccaactttagcataatactcttta |
2833403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 44396240 - 44395984
Alignment:
| Q |
20 |
tcttctataacaacaactgacttactcgtgattccaatcaaaagtttccttaactcagcattatttttcacattggttaactcaatgtcataaatatcat |
119 |
Q |
| |
|
||||| ||||||| || ||||||||| || | |||||||||| ||||| ||||||| ||||| ||||| |||||||| | ||||||| ||||| |
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| T |
44396240 |
tcttcaataacaataattgacttacttgtagtctcaatcaaaagcttcctcaactcagtattatccttcactgctgttaactctaaatcataaacatcat |
44396141 |
T |
|
| Q |
120 |
acttcaaaaaattagcaatagcagcaactagtgatgattttcctgttcctggaggaccataaagcaaatagcctctcttccaaggcttgccaatttttgc |
219 |
Q |
| |
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| ||| |||||||| |||||||||| | || |||||| || || |||||||||||| |||| ||||| || || ||||||| || ||||| | || |
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| T |
44396140 |
aacccaacaaattagccatagcagcaatcattgttgatttaccagtacctggaggaccaaaaagtaaataaccccttttccaagctttaccaatcctagc |
44396041 |
T |
|
| Q |
220 |
ataatactctttagccttactgaatgtaacaagatcatcaacaatctctttcttctt |
276 |
Q |
| |
|
|||| | || ||| ||||| || ||||| | ||| |||| ||||||||||||||| |
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|
| T |
44396040 |
ataaaaatccttacttttactaaaagtaaccaaatcttcaataatctctttcttctt |
44395984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 53395547 - 53395499
Alignment:
| Q |
155 |
gattttcctgttcctggaggaccataaagcaaatagcctctcttccaag |
203 |
Q |
| |
|
|||||||| |||||||||||||||||||| | ||| ||||| ||||||| |
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|
| T |
53395547 |
gattttccagttcctggaggaccataaagaagataacctcttttccaag |
53395499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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