View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10518_low_30 (Length: 211)
Name: NF10518_low_30
Description: NF10518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10518_low_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 33559333 - 33559507
Alignment:
| Q |
17 |
gaaggaacctgtttcttgtcaagacttcgaatcaagttttagaacatgtagcaataaacatgatactgctgcgctgctagttaagaggctgtttgataac |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| |||||||||||| ||| |||||| |||||||||||||||||||||| |
|
|
| T |
33559333 |
gaaggaacctgtttcttgtcaagactttgaatcaagtttcagaacatgttgcagtaaacatgatacggctacgctgccagttaagaggctgtttgataac |
33559432 |
T |
|
| Q |
117 |
agcaattccttacatactgcgaagaaatcaaaggcatcaccatatgatgatcatggtaaacatggagatggtatt |
191 |
Q |
| |
|
||||| ||||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33559433 |
agcaactccttgcatactgttaaaaaatcaaaggcatcaccatatgatgatcacagtaaacatggagatggtatt |
33559507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 39160797 - 39160975
Alignment:
| Q |
17 |
gaaggaacctgtttcttgtcaagacttcgaatcaagttttagaacatgtagcaataaacatgatactgctgcgctgctagttaagaggctgtttgataac |
116 |
Q |
| |
|
|||||||| || ||||||||||||||| || |||||||| ||||||||||| | |||| ||||||| ||| |||| |||||||||||||||||| ||| |
|
|
| T |
39160797 |
gaaggaacatgcttcttgtcaagactttgattcaagtttgagaacatgtagtagtaaatgtgatacttatgcactgccagttaagaggctgtttgagaac |
39160896 |
T |
|
| Q |
117 |
agcaattccttaca---tactgcgaagaaatcaaaggcatcaccatatgatgatcatggtaaacatggagatggtattc |
192 |
Q |
| |
|
||||||||||| | | ||| |||||||||||||| || || ||||||||||| || ||| ||||||||||||||| |
|
|
| T |
39160897 |
agcaattccttggatgtttctgttaagaaatcaaaggcgtcgccgtatgatgatcagggaaaagatggagatggtattc |
39160975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 39208397 - 39208219
Alignment:
| Q |
17 |
gaaggaacctgtttcttgtcaagacttcgaatcaagttttagaacatgtagcaataaacatgatactgctgcgctgctagttaagaggctgtttgataac |
116 |
Q |
| |
|
|||||||| || ||||||||||||||| || |||||||| ||||||||||| | |||| ||||||| ||| |||| |||||||||||||||||| ||| |
|
|
| T |
39208397 |
gaaggaacatgcttcttgtcaagactttgattcaagtttgagaacatgtagtagtaaatgtgatacttatgcactgccagttaagaggctgtttgagaac |
39208298 |
T |
|
| Q |
117 |
agcaattccttaca---tactgcgaagaaatcaaaggcatcaccatatgatgatcatggtaaacatggagatggtattc |
192 |
Q |
| |
|
||||||||||| | | ||| |||||||||||||| || || ||||||||||| || ||| ||||||||||||||| |
|
|
| T |
39208297 |
agcaattccttggatgtttctgttaagaaatcaaaggcgtcgccgtatgatgatcagggaaaagatggagatggtattc |
39208219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 39392031 - 39391930
Alignment:
| Q |
17 |
gaaggaacctgtttcttgtcaagacttcgaatcaagttttagaacatgtagcaataaacatgatactgctgcgctgctagttaagaggctgtttgataac |
116 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| |||||||||||||||| | ||||| |||||||||| | || | ||||||||| ||||||||| || |
|
|
| T |
39392031 |
gaaggaacctgtttcttgtcaagactttgattcatgttttagaacatgtagtactaaacttgatactgctacacttccagttaagagactgtttgatgac |
39391932 |
T |
|
| Q |
117 |
ag |
118 |
Q |
| |
|
|| |
|
|
| T |
39391931 |
ag |
39391930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 39399300 - 39399268
Alignment:
| Q |
95 |
agttaagaggctgtttgataacagcaattcctt |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
39399300 |
agttaagaggctgtttgataacagcaattcctt |
39399268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 44951598 - 44951566
Alignment:
| Q |
95 |
agttaagaggctgtttgataacagcaattcctt |
127 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
44951598 |
agttaagaggctatttgataacagcaattcctt |
44951566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 16112224 - 16112256
Alignment:
| Q |
95 |
agttaagaggctgtttgataacagcaattcctt |
127 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
16112224 |
agttaagaggttgtttgataacagcaattcctt |
16112256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University