View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10518_low_33 (Length: 203)

Name: NF10518_low_33
Description: NF10518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10518_low_33
NF10518_low_33
[»] chr5 (2 HSPs)
chr5 (1-188)||(41741224-41741411)
chr5 (8-66)||(2431022-2431080)
[»] chr1 (2 HSPs)
chr1 (1-188)||(292351-292538)
chr1 (95-158)||(35535519-35535581)
[»] chr8 (1 HSPs)
chr8 (7-188)||(29022536-29022716)
[»] chr2 (2 HSPs)
chr2 (1-188)||(23357544-23357731)
chr2 (1-66)||(25665474-25665539)
[»] chr4 (4 HSPs)
chr4 (2-180)||(28987912-28988090)
chr4 (95-188)||(15606461-15606553)
chr4 (95-188)||(15606813-15606905)
chr4 (121-163)||(16561504-16561546)
[»] chr3 (3 HSPs)
chr3 (54-188)||(16250867-16251000)
chr3 (1-66)||(8426517-8426582)
chr3 (95-162)||(23493452-23493518)
[»] scaffold0961 (1 HSPs)
scaffold0961 (88-188)||(752-851)
[»] chr7 (2 HSPs)
chr7 (88-188)||(3750122-3750223)
chr7 (95-158)||(19095466-19095528)
[»] chr6 (1 HSPs)
chr6 (124-163)||(17834509-17834548)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 6e-76; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 41741411 - 41741224
Alignment:
Q  1 gcttccaaaaaactcagttttgagaccaaaacgcaggtacaactaaagcaggaattcctaacttctccgttagagaaaacgcaagtacaacctctaattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||| ||||||    
T  41741411 gcttccaaaaaactcagttttgagaccaaaacgcaggtacaactaaagcaggaattcctagcttctacgttagagaaaacacaggtacaacctataattt 41741312  T
Q  101 ctcaagtggcagttacttttccaaattacccataaattcaagtcttcaatttctctttctcacgacctttcttcctttcattacttca 188  Q
    |||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| || | ||||||||||||||||||||||    
T  41741311 ctcaagtggcaggtactttaccaaattacccataaattcaagccttcaatttctctttcttacaaactttcttcctttcattacttca 41741224  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 2431080 - 2431022
Alignment:
Q  8 aaaaactcagttttgagaccaaaacgcaggtacaactaaagcaggaattcctaacttct 66  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||    
T  2431080 aaaaactcagttttgagaccaaaacgccggtacagctaaagcaggaattcctagcttct 2431022  T

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Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 292538 - 292351
Alignment:
Q  1 gcttccaaaaaactcagttttgagaccaaaacgcaggtacaactaaagcaggaattcctaacttctccgttagagaaaacgcaagtacaacctctaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| | ||||||||| | || |||||||||| |||||    
T  292538 gcttccaaaaaactcagttttgagaccaaaacgcaggtatagctaaagcaggaattcctagcttctacattagagaaagcacaggtacaacctcaaattt 292439  T
Q  101 ctcaagtggcagttacttttccaaattacccataaattcaagtcttcaatttctctttctcacgacctttcttcctttcattacttca 188  Q
    |||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  292438 ctcaagtggcaggtactttaccaaattacccataaattcaagccttcaatttctctttctcacaacctttcttcctttcattacttca 292351  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 35535519 - 35535581
Alignment:
Q  95 taatttctcaagtggcagttacttttccaaattacccataaattcaagtcttcaatttctcttt 158  Q
    |||||||||||||| ||| |||||  || |||||||| |||||||||| |||||||||||||||    
T  35535519 taatttctcaagtgacaggtactta-cctaattacccctaaattcaagccttcaatttctcttt 35535581  T

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Target: chr8 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 29022536 - 29022716
Alignment:
Q  7 aaaaaactcagttttgagaccaaaacgcaggtacaactaaagcaggaattcctaacttctccgttagagaaaacgcaagtacaacctctaatttctcaag 106  Q
    |||||| ||||||||||||||||||||||| |||| |||||||||||||| ||| |||||  ||||||||||||||| |||||||||||||||| |||||    
T  29022536 aaaaaattcagttttgagaccaaaacgcag-tacagctaaagcaggaatttctagcttctatgttagagaaaacgcacgtacaacctctaatttatcaag 29022634  T
Q  107 tggcagttacttttccaaattacccataaattcaagtcttcaatttctctttctcacgacctttcttcctttcattacttca 188  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29022635 tggcaggtacttttccaaattacccataaattcaagtcttcaatttctctttctcacaacctttcttcctttcattacttca 29022716  T

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Target: chr2 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 23357544 - 23357731
Alignment:
Q  1 gcttccaaaaaactcagttttgagaccaaaacgcaggtacaactaaagcaggaattcctaacttctccgttagagaaaacgcaagtacaacctctaattt 100  Q
    ||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||  |||| |||||||||||||||| ||||||||||||||||    
T  23357544 gcttccaaaaaactcagttttgagatcaaaacgcatgtacagctaaatcaggaattcctagtttctacgttagagaaaacgcaggtacaacctctaattt 23357643  T
Q  101 ctcaagtggcagttacttttccaaattacccataaattcaagtcttcaatttctctttctcacgacctttcttcctttcattacttca 188  Q
     ||||||||||   ||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  23357644 ttcaagtggcaagaactttaccaaattacccataaattcaagccttcaatttctctttctcacaacctttcttcctttcattacttca 23357731  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 25665474 - 25665539
Alignment:
Q  1 gcttccaaaaaactcagttttgagaccaaaacgcaggtacaactaaagcaggaattcctaacttct 66  Q
    |||| ||||||||||||||||||||||||||||  |||||| |||||||||||||||||| |||||    
T  25665474 gctttcaaaaaactcagttttgagaccaaaacgtcggtacagctaaagcaggaattcctagcttct 25665539  T

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Target: chr4 (Bit Score: 119; Significance: 5e-61; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 2 - 180
Target Start/End: Complemental strand, 28988090 - 28987912
Alignment:
Q  2 cttccaaaaaactcagttttgagaccaaaacgcaggtacaactaaagcaggaattcctaacttctccgttagagaaaacgcaagtacaacctctaatttc 101  Q
    ||||||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||| ||||| || ||||||||||||| ||||||||| |||||||    
T  28988090 cttccaaaaaactcaattttgagacaaaaacgcaggtacagttaaagcaggaattcctagcttctgcggtagagaaaacgcaggtacaacctttaatttc 28987991  T
Q  102 tcaagtggcagttacttttccaaattacccataaattcaagtcttcaatttctctttctcacgacctttcttcctttca 180  Q
    ||||||||||| |||||| || |||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||    
T  28987990 tcaagtggcaggtactttacctaattacccataaattcaagtctccaatttctctttctcacaagctttcttcctttca 28987912  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 15606461 - 15606553
Alignment:
Q  95 taatttctcaagtggcagttacttttccaaattacccataaattcaagtcttcaatttctctttctcacgacctttcttcc-tttcattacttca 188  Q
    |||||||||||||||||| |||||  || |||||||  |||||||||| |||||| ||||||||||||| |  |||||||| |||||||||||||    
T  15606461 taatttctcaagtggcaggtactta-cctaattacctctaaattcaagccttcaaattctctttctcac-agttttcttccttttcattacttca 15606553  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 15606813 - 15606905
Alignment:
Q  95 taatttctcaagtggcagttacttttccaaattacccataaattcaagtcttcaatttctctttctcacgacctttcttcc-tttcattacttca 188  Q
    |||||||||||||||||| |||||  || |||||||  |||||||||| |||||| ||||||||||||| |  |||||||| |||||||||||||    
T  15606813 taatttctcaagtggcaggtactta-cctaattacctctaaattcaagccttcaaattctctttctcac-agttttcttccttttcattacttca 15606905  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 16561504 - 16561546
Alignment:
Q  121 ccaaattacccataaattcaagtcttcaatttctctttctcac 163  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  16561504 ccaaattacccataaattcaagccttcaatctctctttctcac 16561546  T

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Target: chr3 (Bit Score: 59; Significance: 3e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 54 - 188
Target Start/End: Complemental strand, 16251000 - 16250867
Alignment:
Q  54 attcctaacttctccgttagagaaaacgcaagtacaacctctaatttctcaagtggcagttacttttccaaattacccataaattcaagtcttcaatttc 153  Q
    ||||||| ||| | || ||||||||||||| || |||||| |||||| |||| |||||| |||||| || ||||||| ||||||||||| ||||||||||    
T  16251000 attcctagcttatacggtagagaaaacgca-gtccaacctttaatttgtcaattggcaggtactttacctaattacctataaattcaagccttcaatttc 16250902  T
Q  154 tctttctcacgacctttcttcctttcattacttca 188  Q
    |||||||||| || ||| ||||||| |||||||||    
T  16250901 tctttctcacaactttttttcctttaattacttca 16250867  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 8426582 - 8426517
Alignment:
Q  1 gcttccaaaaaactcagttttgagaccaaaacgcaggtacaactaaagcaggaattcctaacttct 66  Q
    ||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||| |||||    
T  8426582 gcttccaaaaaactcagttttgagatcaaaacgccggtacagctaaagcaggaattcctagcttct 8426517  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 23493452 - 23493518
Alignment:
Q  95 taatttctcaagtggcagttacttttccaaattacccataaattcaagtcttcaatttctctttctca 162  Q
    |||||||||||||||||| |||||  || |||||||| |||||||||| |||||||||||||||||||    
T  23493452 taatttctcaagtggcaggtactta-cctaattacccctaaattcaagccttcaatttctctttctca 23493518  T

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Target: scaffold0961 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 188
Target Start/End: Complemental strand, 851 - 752
Alignment:
Q  88 caacctctaatttctcaagtggcagttacttttccaaattacccataaattcaagtcttcaatttctctttctcacgacctttcttcc-tttcattactt 186  Q
    |||||| |||||||||||| | ||| |||||  || |||||||| |||||||||| |||||||||||||||||||| |  |||||||| |||||||||||    
T  851 caacctttaatttctcaagggacaggtactta-cctaattacccctaaattcaagccttcaatttctctttctcac-aattttcttccttttcattactt 754  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 3750122 - 3750223
Alignment:
Q  88 caacctctaatttctcaa-gtggcagttacttttccaaattacccataaattcaagtcttcaatttctctttctcacgacctttcttcctttcattactt 186  Q
    |||||| ||||||||||| |||| || |||||| || ||||||| ||||||| ||| |||||||||||||||||||| |  ||||||  |||| ||||||    
T  3750122 caacctttaatttctcaaagtggtaggtactttacctaattacctataaatttaagccttcaatttctctttctcacaatttttctttgtttcgttactt 3750221  T
Q  187 ca 188  Q
    ||    
T  3750222 ca 3750223  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 19095466 - 19095528
Alignment:
Q  95 taatttctcaagtggcagttacttttccaaattacccataaattcaagtcttcaatttctcttt 158  Q
    |||||||||||||||||| |||||  || |||||||| |||||||||| |||||||||||||||    
T  19095466 taatttctcaagtggcaggtactta-cctaattacccttaaattcaagccttcaatttctcttt 19095528  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 17834548 - 17834509
Alignment:
Q  124 aattacccataaattcaagtcttcaatttctctttctcac 163  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  17834548 aattacccctaaattcaagccttcaatttctctttctcac 17834509  T

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