View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10518_low_6 (Length: 335)

Name: NF10518_low_6
Description: NF10518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10518_low_6
NF10518_low_6
[»] chr5 (3 HSPs)
chr5 (17-330)||(32980279-32980582)
chr5 (28-94)||(32981752-32981818)
chr5 (57-115)||(32981819-32981876)
[»] chr4 (1 HSPs)
chr4 (215-306)||(2635084-2635178)
[»] chr6 (1 HSPs)
chr6 (234-306)||(578872-578945)
[»] chr7 (1 HSPs)
chr7 (235-283)||(12306920-12306968)
[»] chr2 (2 HSPs)
chr2 (237-308)||(3352021-3352093)
chr2 (215-260)||(9943344-9943391)
[»] chr1 (1 HSPs)
chr1 (237-308)||(34387761-34387833)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 32980279 - 32980582
Alignment:
Q  17 agaatcaaggtttttgattcatcgtgttgtgttatgtattgaatataacaatgagggaagagtttgtaggtaaatgaaaaaatgtagttcttattttcaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32980279 agaatcaaggtttttgattcatcgtgttgtgttatgtattgaatataacaatgagggaagagtttgtaggtaaatgaaaaaatgtagttcttattttcaa 32980378  T
Q  117 aa-caatgagggaaggtttttgttaatttaaatttaaggtagctgtttattgttttgtgagtgagtatagtgtatgtttggttcccgcttttggacaagc 215  Q
       | ||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32980379 tttctat-----------tttgttaatttaaatttaaggtagctgtttattgttttgtgagtgagtatagtgtatgtttggttcccgcttttggacaagc 32980467  T
Q  216 caaaattgattctaggtataaaattgattttaacatgttttgttgttctttagtagaagtgattttgctgcagaattgattttacttgaagttaagactc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  32980468 caaaattgattctaggtataaaattgattttaacatgttttgttgttttttagtagaagtgattttgctgcagaattgattttacttgaagttaagattt 32980567  T
Q  316 atatcctttgcttct 330  Q
    ||||| |||| ||||    
T  32980568 atatcttttgattct 32980582  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 32981752 - 32981818
Alignment:
Q  28 ttttgattcatcgtgttgtgttatgtattgaatataacaatgagggaagagtttgtaggtaaatgaa 94  Q
    ||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||||||||||||||    
T  32981752 ttttgattcatggtgttgtgttacgaattgaagataacaatgagggaagagtttgtaggtaaatgaa 32981818  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 32981819 - 32981876
Alignment:
Q  57 gaatataacaatgagggaagagtttgtaggtaaatgaaaaaatgtagttcttattttca 115  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32981819 gaatataacaatgagggaagagtttgtaggtaaatg-aaaaatgtagttcttattttca 32981876  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 306
Target Start/End: Original strand, 2635084 - 2635178
Alignment:
Q  215 ccaaaattgattctag--gtataaaattgattttaacatgttttgttgttctttagtagaagtgattttg-ctgcagaattgattttacttgaag 306  Q
    ||||||||||||||||  || ||||||||||||| ||||||||  ||| | || ||||||| |||||||| || ||||||||||| | |||||||    
T  2635084 ccaaaattgattctagaagtgtaaaattgattttgacatgtttgattgcttttaagtagaactgattttgcctccagaattgattatgcttgaag 2635178  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 578872 - 578945
Alignment:
Q  234 taaaattgattttaacatgttttgttgttctttagtagaagtgattttgc-tgcagaattgattttacttgaag 306  Q
    ||||||||||||| |||||||| |||||| || ||||||| | ||||||| || |||||||||  |||||||||    
T  578872 taaaattgattttgacatgtttagttgtttttaagtagaaataattttgcttgtagaattgatactacttgaag 578945  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 12306920 - 12306968
Alignment:
Q  235 aaaattgattttaacatgttttgttgttctttagtagaagtgattttgc 283  Q
    |||||||||||| |||||||| |||| |||| ||||||| |||||||||    
T  12306920 aaaattgattttgacatgtttggttgctcttgagtagaattgattttgc 12306968  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 3352021 - 3352093
Alignment:
Q  237 aattgattttaacatgttttgttgttctttagtagaagtgattttg-ctgcagaattgattttacttgaagtt 308  Q
    |||||||| | |||| |||||||||| || ||||||| |||| ||| || || ||||||||||||||||||||    
T  3352021 aattgattctgacattttttgttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagtt 3352093  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 9943344 - 9943391
Alignment:
Q  215 ccaaaattgattct--aggtataaaattgattttaacatgttttgttg 260  Q
    ||||||||||||||  |||| |||||||||||||||||||||| ||||    
T  9943344 ccaaaattgattctgaaggtgtaaaattgattttaacatgtttggttg 9943391  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 34387833 - 34387761
Alignment:
Q  237 aattgattttaacatgttttgttgttctttagtagaagtgattttg-ctgcagaattgattttacttgaagtt 308  Q
    |||||||| | |||| |||||||||| || ||||||| |||| ||| || || ||||||||||||||||||||    
T  34387833 aattgattctgacattttttgttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagtt 34387761  T

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