View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10518_low_7 (Length: 335)
Name: NF10518_low_7
Description: NF10518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10518_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 48169900 - 48169595
Alignment:
| Q |
18 |
gtttgggggtaccaacctagctgaaatgccttttctaccatttgatggctgtgcactttattttttgcttaaatatataatttattttatgagtttatgc |
117 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48169900 |
gtttgggggtaccaacctagctcagatgccttttctaccatttgatggttgtgcacattattttttgcttaaatatataatttattttatgagtttatgc |
48169801 |
T |
|
| Q |
118 |
atgttgataaaattgccaaatttgttggaggtgcttgtgtttttaatgttaactgtgccagttgttttaatttccccaaataagtgccaagtctggaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
48169800 |
atgttgataaaattgccaaatttgttggaggtgcttgtgtttttaatgttaactgtgctagttgttttaatttccccaaataagtgccaagtctggaatt |
48169701 |
T |
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| Q |
218 |
tgttctagagtcattgctctagatttttctaaaaatatgcttcataagtgttatggtttcataaagatgagatcacatgcattcacccacatgttttcct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48169700 |
tgttctagagtcattgctctagatttttctaaaaatatgcttcataagtgttatggtttcataaagatgagatcacacgcattcacccacatgttttcct |
48169601 |
T |
|
| Q |
318 |
cttcct |
323 |
Q |
| |
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|||||| |
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| T |
48169600 |
cttcct |
48169595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 95 - 309
Target Start/End: Complemental strand, 48155588 - 48155376
Alignment:
| Q |
95 |
taatttattttatgagtttatgcatgttgataaa-attgccaaatttgttggaggtgcttgtgtttttaatgttaactgtgccagttgttttaatttccc |
193 |
Q |
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||||||||||| |||||||||||||||| | | ||| |||||| || | ||||| |||| || |||||||||||||||| ||||||||||||| ||| |
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| T |
48155588 |
taatttatttt--gagtttatgcatgttggtcaggattaccaaatctgctaaaggtggttgtcttattaatgttaactgtgctagttgttttaattaccc |
48155491 |
T |
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| Q |
194 |
caaataagtgccaagtctggaatttgttctagagtcattgctctagatttttctaaaaatatgcttcataagtgttatggtttcataaagatgagatcac |
293 |
Q |
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||| || || ||| ||| || | ||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||||||||| || |
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| T |
48155490 |
caacaaattgtcaaatctagacct-gttctagagtcattgctctagatttttctgaaaatatccttcgtaagtgttatgatttcataaagatgagattac |
48155392 |
T |
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| Q |
294 |
atgcattcacccacat |
309 |
Q |
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| || | ||||||||| |
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| T |
48155391 |
acgcttacacccacat |
48155376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 182 - 290
Target Start/End: Complemental strand, 48160419 - 48160311
Alignment:
| Q |
182 |
ttttaatttccccaaataagtgccaagtctggaatttgttctagagtcattgctctagatttttctaaaaatatgcttcataagtgttatggtttcataa |
281 |
Q |
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||||||||||||| || || ||| || |||| || ||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||| |
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| T |
48160419 |
ttttaatttcccctaaaaattgcaaaatctgcaacctgttctagattcattgcactagatttttcttaaaatatgcttcacaagtgttatggcttcataa |
48160320 |
T |
|
| Q |
282 |
agatgagat |
290 |
Q |
| |
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||||||||| |
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| T |
48160319 |
agatgagat |
48160311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 290
Target Start/End: Complemental strand, 48155264 - 48155138
Alignment:
| Q |
160 |
ttaatgttaactgtgccagttgttttaatttccccaaataagtgccaagtctggaatttgttctagagtcattgctctagatt-tttctaaaaatatgct |
258 |
Q |
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|||||||||||| ||| || ||||||||||||||| | || |||||| ||||| | ||||||||||||||||| ||||||| ||| | |||||||||| |
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| T |
48155264 |
ttaatgttaactttgctagctgttttaatttcccctacaaattgccaaatctggtacctgttctagagtcattgcgctagattgtttttgaaaatatgct |
48155165 |
T |
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| Q |
259 |
tcataagtgttatggtttcataaagatgagat |
290 |
Q |
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| ||| ||||||||||||||||||||| |
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| T |
48155164 |
ccgtaa-----atggtttcataaagatgagat |
48155138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 14197137 - 14197065
Alignment:
| Q |
218 |
tgttctagagtcattgctctagatttttctaaaaatatgcttcataagtgttatggtttcataaagatgagat |
290 |
Q |
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||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14197137 |
tgttctagattcattgcactagatttttcttaaaatatgcttcataagtgttatggcttcataaagatgagat |
14197065 |
T |
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