View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10519_low_1 (Length: 378)
Name: NF10519_low_1
Description: NF10519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10519_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 36406909 - 36406561
Alignment:
| Q |
18 |
caaatttcttgtaattattttaaaacatgtatacaaggctataaataggacaatggtcaacttagtgttagtgagaggcatcaagtttggtgatatgtcc |
117 |
Q |
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| T |
36406909 |
caaatttcttgtaattattttaaaacatgtatacaaggctataagtaggacaatggtcaacttagtgttagtgagaggcatgaagtttgatgatatgtcc |
36406810 |
T |
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| Q |
118 |
tgcttaatgttgaaggcctaaatttgtaatagatattttttaagagaatagaaataggtttgacctgtaaaaaatttaactaatgttaattgtttac-at |
216 |
Q |
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| T |
36406809 |
tgcttaatgttgaaggcctaaatttgtaatagatat-ttttaagagaatagaaataggtttgacctgtaaaaaatttaactaatgttaattgtttacaat |
36406711 |
T |
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| Q |
217 |
tatgtgaagtttgaatttgttgcatttaggagnnnnnnnnaggaaataggttacattaagtatctataagccagaattagcataagctcgagcgttacat |
316 |
Q |
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| T |
36406710 |
tatgtgaagtttgaatttgttgcatttaggagttttttttaggaaataggttacattaagtatctataagccagaattagcataagctcgagcgttacat |
36406611 |
T |
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| Q |
317 |
gttacatgaagtcactacgctttaggcatgtgtacatacaagtttattca |
366 |
Q |
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| T |
36406610 |
gttacattaagtcactacgctttaggcttgtatacatacaagtttattca |
36406561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 36428985 - 36428819
Alignment:
| Q |
22 |
tttcttgtaattattttaaaacatgtatacaaggctataaataggacaatggtcaacttagtgttagtgagaggcatcaagtttggtgatatgtc-ctgc |
120 |
Q |
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| T |
36428985 |
tttcttgcaattattttaaaacatgtatacaaggctataaataggcctacactcaaattagtgttggtgaaaggcgtcaagtttgatgttatgtctcttt |
36428886 |
T |
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| Q |
121 |
ttaatgttgaaggcctaaa-tttgtaatagatattttttaagagaatagaaataggtttgacctgtaa |
187 |
Q |
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| T |
36428885 |
tagatgtttaaggcctaaattttatgatagata-tttttacgagaataggaataggtttgacctgtaa |
36428819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 36435457 - 36435295
Alignment:
| Q |
18 |
caaatttcttgtaattattttaaaacatgtatacaaggctataaataggacaatggtcaacttagtgttagtgagaggcatca-agtttggtgatatg-- |
114 |
Q |
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| T |
36435457 |
caaatttctcgtcattattttaacacatgtatacaaggttttaaataggacaatggtcaatttagtgtaagtgagatgcctcagagtttgatgatatgcc |
36435358 |
T |
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| Q |
115 |
--tcctgcttaatgttgaaggcctaaatttgtaatagatattttttaagagaatagaaataggt |
176 |
Q |
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| T |
36435357 |
ccccctgctaattgttgaggtcctgaattcgtaataga-aaattttaagagaatagaaagaggt |
36435295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 36375948 - 36375884
Alignment:
| Q |
20 |
aatttcttgtaattattttaaaacatgtatacaaggctataaataggacaatggtcaacttagtg |
84 |
Q |
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| T |
36375948 |
aatttcttgtcttcattttaaaacatgtatacatagatataaataggccaatggtcaacttagtg |
36375884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 36375856 - 36375794
Alignment:
| Q |
125 |
tgttgaaggcctaaatttgtaatagatattttttaagagaatagaaataggtttgacctgtaaa |
188 |
Q |
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| T |
36375856 |
tgttgaaggcctaaattcctaatatatatttttga-gagaatagaaataggtttaacctgtaaa |
36375794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 36428793 - 36428738
Alignment:
| Q |
182 |
ctgtaaaaaatttaactaatgttaattgtttac-attatgtgaagtttgaatttgt |
236 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||| |||||| ||||| |
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| T |
36428793 |
ctgtaaaaaattgaactaatgttaattgtttacaattatgtgacgtttgagtttgt |
36428738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 36418980 - 36418904
Alignment:
| Q |
38 |
taaaacatgtatacaaggctataaataggacaatggtcaacttagtgttagtgagaggcatcaagtttggtgatatgt |
115 |
Q |
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| T |
36418980 |
taaaacatctataca-ggctataaataggccaacactcaaattagtgttagtgaaaggcatcaagtttgatgttatgt |
36418904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 36418831 - 36418779
Alignment:
| Q |
185 |
taaaaaatttaactaatgttaattgtttac-attatgtgaagtttgaatttgt |
236 |
Q |
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| T |
36418831 |
taaaaaattgaattaatgttaattgtttacaattatgtgaagtttgagtttgt |
36418779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 338
Target Start/End: Complemental strand, 36428709 - 36428635
Alignment:
| Q |
264 |
aggttacattaagtatctataagccagaattagcataagctcgagcgttacatgttacatgaagtcactacgctt |
338 |
Q |
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| T |
36428709 |
aggttacattgagtagctataagccagaattagcatatgcccttaagttacaggttacattaagtcactatgctt |
36428635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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