View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10519_low_10 (Length: 248)

Name: NF10519_low_10
Description: NF10519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10519_low_10
NF10519_low_10
[»] chr8 (6 HSPs)
chr8 (1-230)||(6777630-6777860)
chr8 (114-230)||(23015746-23015862)
chr8 (114-229)||(285353-285469)
chr8 (114-229)||(630408-630524)
chr8 (114-229)||(816220-816336)
chr8 (127-167)||(20730940-20730980)
[»] scaffold0180 (2 HSPs)
scaffold0180 (89-230)||(10787-10929)
scaffold0180 (16-62)||(10956-11000)
[»] scaffold0254 (1 HSPs)
scaffold0254 (114-230)||(24248-24364)
[»] scaffold0018 (1 HSPs)
scaffold0018 (114-230)||(78-194)
[»] chr6 (7 HSPs)
chr6 (114-230)||(2147784-2147900)
chr6 (127-167)||(18553403-18553443)
chr6 (127-167)||(18781819-18781859)
chr6 (127-167)||(20414951-20414991)
chr6 (127-167)||(20417598-20417638)
chr6 (127-167)||(20419684-20419724)
chr6 (127-167)||(30518330-30518370)
[»] chr2 (9 HSPs)
chr2 (114-230)||(24808134-24808250)
chr2 (114-230)||(44792821-44792937)
chr2 (89-230)||(24806278-24806418)
chr2 (114-217)||(18535312-18535415)
chr2 (128-170)||(31939075-31939117)
chr2 (4-62)||(24806445-24806503)
chr2 (4-62)||(18535465-18535522)
chr2 (127-167)||(6050268-6050308)
chr2 (127-167)||(15409865-15409905)
[»] scaffold0139 (2 HSPs)
scaffold0139 (114-230)||(6473-6589)
scaffold0139 (16-62)||(6378-6422)
[»] scaffold0002 (1 HSPs)
scaffold0002 (114-217)||(374740-374843)
[»] chr3 (6 HSPs)
chr3 (114-217)||(47417986-47418089)
chr3 (114-217)||(16347206-16347309)
chr3 (4-60)||(5553955-5554011)
chr3 (4-41)||(16347098-16347135)
chr3 (4-41)||(47418159-47418196)
chr3 (128-164)||(22271199-22271235)
[»] chr1 (8 HSPs)
chr1 (128-217)||(48463666-48463755)
chr1 (128-217)||(48463156-48463245)
chr1 (114-217)||(40554456-40554559)
chr1 (70-230)||(20759638-20759798)
chr1 (114-167)||(6473828-6473880)
chr1 (5-62)||(31390397-31390454)
chr1 (127-167)||(20127137-20127177)
chr1 (127-167)||(22062190-22062230)
[»] chr4 (12 HSPs)
chr4 (114-217)||(11099053-11099156)
chr4 (70-229)||(24663391-24663550)
chr4 (114-207)||(19456514-19456607)
chr4 (128-209)||(19459934-19460015)
chr4 (115-210)||(19460355-19460450)
chr4 (128-171)||(19180479-19180522)
chr4 (16-59)||(21377708-21377751)
chr4 (128-217)||(19458233-19458322)
chr4 (114-167)||(39488195-39488247)
chr4 (127-167)||(9167251-9167291)
chr4 (127-167)||(15019328-15019368)
chr4 (16-44)||(42872627-42872655)
[»] scaffold0146 (2 HSPs)
scaffold0146 (128-218)||(7754-7844)
scaffold0146 (4-41)||(27616-27653)
[»] scaffold0013 (2 HSPs)
scaffold0013 (114-216)||(241622-241724)
scaffold0013 (4-62)||(241510-241568)
[»] scaffold0025 (1 HSPs)
scaffold0025 (114-217)||(55433-55536)
[»] chr5 (3 HSPs)
chr5 (5-62)||(16781091-16781148)
chr5 (127-167)||(244486-244526)
chr5 (127-167)||(29950183-29950223)
[»] scaffold0026 (1 HSPs)
scaffold0026 (5-62)||(87043-87100)
[»] scaffold0321 (1 HSPs)
scaffold0321 (16-62)||(5709-5753)
[»] chr7 (5 HSPs)
chr7 (128-171)||(12364323-12364366)
chr7 (4-41)||(41000261-41000298)
chr7 (127-167)||(9595482-9595522)
chr7 (127-167)||(9646445-9646485)
chr7 (127-167)||(32706405-32706445)
[»] scaffold0094 (1 HSPs)
scaffold0094 (16-62)||(13049-13095)
[»] scaffold0585 (1 HSPs)
scaffold0585 (127-168)||(917-958)
[»] scaffold0096 (1 HSPs)
scaffold0096 (127-167)||(22660-22700)
[»] scaffold0075 (1 HSPs)
scaffold0075 (127-167)||(25806-25846)
[»] scaffold0010 (1 HSPs)
scaffold0010 (127-167)||(136823-136863)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 6777860 - 6777630
Alignment:
Q  1 tctaagcctattttttatataaagggggcgaaaataatgaataagatatgtagaattttgatnnnnnnn-gtcacttcatttgaatttggaagctttgct 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  6777860 tctaagcctattttttatataaagggggcgaaaataatgaataagatatgtagaattttgataaaaaaaagtcacttcatttgaatttggaagctttgct 6777761  T
Q  100 tgttttttagttatgattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaa 199  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6777760 tcttttttagttatgattgaatcatgacttaatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaacaacttccttggattgagaa 6777661  T
Q  200 tttgtttggttaccattttccgcctatttcc 230  Q
    |||||||||||||||||||||||||||||||    
T  6777660 tttgtttggttaccattttccgcctatttcc 6777630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 23015862 - 23015746
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttacc 213  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| |||||||||||||||||    
T  23015862 gattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaattaaacatcttccttggattgggaatttgtttggttacc 23015763  T
Q  214 attttccgcctatttcc 230  Q
    |||||| ||||||||||    
T  23015762 attttctgcctatttcc 23015746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 229
Target Start/End: Complemental strand, 285469 - 285353
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgt-ttggttac 212  Q
    ||||||||||||  ||||||||||||| |||| | ||||||| || |||||||||||||| || |  |  ||||||||||||||||||||| ||||||      
T  285469 gattgaatcatgttttgatcttatcaaaaaacaatgtttcttatgacgatcctctaccaagcttatcatattccttggattgagaatttgtgttggtttt 285370  T
Q  213 cattttccgcctatttc 229  Q
    ||||| ||| |||||||    
T  285369 catttcccgtctatttc 285353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 630408 - 630524
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgt-ttggttac 212  Q
    ||||||||||||  ||||||||||||| |||| | ||||||| || |||||||||||||| || |  |  ||||||||||||||||||||| ||||||      
T  630408 gattgaatcatgttttgatcttatcaaaaaacaatgtttcttatgacgatcctctaccaagcttatcatattccttggattgagaatttgtgttggtttt 630507  T
Q  213 cattttccgcctatttc 229  Q
    ||||| ||| |||||||    
T  630508 catttcccgtctatttc 630524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 816220 - 816336
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgt-ttggttac 212  Q
    ||||||||||||  ||||||||||||| |||| | ||||||| || |||||||||||||| || |  |  ||||||||||||||||||||| ||||||      
T  816220 gattgaatcatgttttgatcttatcaaaaaacaatgtttcttatgacgatcctctaccaagcttatcatattccttggattgagaatttgtgttggtttt 816319  T
Q  213 cattttccgcctatttc 229  Q
    ||||| ||| |||||||    
T  816320 catttcccgtctatttc 816336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 20730940 - 20730980
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  20730940 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 20730980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 89 - 230
Target Start/End: Complemental strand, 10929 - 10787
Alignment:
Q  89 gaagctttgcttgttttttagttatg-attgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttcc 187  Q
    |||||||||||| |||||| ||| || |||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||    
T  10929 gaagctttgcttcttttttggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaattaaacatcttcc 10830  T
Q  188 ttggattgagaatttgtttggttaccattttccgcctatttcc 230  Q
    ||| |||| ||||||||||||||||||||||| ||||||||||    
T  10829 ttgaattgggaatttgtttggttaccattttctgcctatttcc 10787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 11000 - 10956
Alignment:
Q  16 tatataaagggggcgaaaataatgaataagatatgtagaattttgat 62  Q
    |||||||||||||||||||||||||||  |||| |||||||||||||    
T  11000 tatataaagggggcgaaaataatgaat--gataagtagaattttgat 10956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 24364 - 24248
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttacc 213  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| |||||||||||||||||    
T  24364 gattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaattaaacatcttccttggattgggaatttgtttggttacc 24265  T
Q  214 attttccgcctatttcc 230  Q
    |||||| ||||||||||    
T  24264 attttctgcctatttcc 24248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 194 - 78
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttacc 213  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| |||||||||||||||||    
T  194 gattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaattaaacatcttccttggattgggaatttgtttggttacc 95  T
Q  214 attttccgcctatttcc 230  Q
    |||||| ||||||||||    
T  94 attttctgcctatttcc 78  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 2147900 - 2147784
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttacc 213  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| |||||||||||||||||    
T  2147900 gattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaattaaacatcttccttggattgggaatttgtttggttacc 2147801  T
Q  214 attttccgcctatttcc 230  Q
    |||||| ||||||||||    
T  2147800 attttctgcctatttcc 2147784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 18553403 - 18553443
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  18553403 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 18553443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 18781819 - 18781859
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  18781819 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 18781859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 20414991 - 20414951
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  20414991 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 20414951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 20417638 - 20417598
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  20417638 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 20417598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 20419724 - 20419684
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  20419724 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 20419684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 30518370 - 30518330
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  30518370 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 30518330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 24808250 - 24808134
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttacc 213  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| |||||||||||||||||    
T  24808250 gattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaattaaacatcttccttggattgggaatttgtttggttacc 24808151  T
Q  214 attttccgcctatttcc 230  Q
    |||||| ||||||||||    
T  24808150 attttctgcctatttcc 24808134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 44792937 - 44792821
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttacc 213  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||||||||||||| | || |||| | ||||||||||||| ||||||||||||||| |    
T  44792937 gattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctatcgaattaaacatcttccttggattgggaatttgtttggttatc 44792838  T
Q  214 attttccgcctatttcc 230  Q
    |||||| ||||||||||    
T  44792837 attttctgcctatttcc 44792821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 89 - 230
Target Start/End: Complemental strand, 24806418 - 24806278
Alignment:
Q  89 gaagctttgcttgttttttagttatg-attgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttcc 187  Q
    |||||||||||| |||||| ||| || |||||| ||||  |||||||||||||||||||||||||||||||| |||||||||||||| |||| | ||| |    
T  24806418 gaagctttgcttctttttt-gttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggtgatcctctaccaaa-taaacatctttc 24806321  T
Q  188 ttggattgagaatttgtttggttaccattttccgcctatttcc 230  Q
    ||||||||  |||||||||||||||||||||| ||||||||||    
T  24806320 ttggattggaaatttgtttggttaccattttctgcctatttcc 24806278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 18535415 - 18535312
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttacc 213  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| ||| ||||||||||| |    
T  18535415 gattgaaccatgtattgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaattaaacatcttccttggattgggaacttgtttggttatc 18535316  T
Q  214 attt 217  Q
    ||||    
T  18535315 attt 18535312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 31939075 - 31939117
Alignment:
Q  128 ttgatcttatcaagaaaccacgtttcttgtggcgatcctctac 170  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  31939075 ttgatcttatcaagaaaccatgtttcttgtggcgatcctctac 31939117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 24806503 - 24806445
Alignment:
Q  4 aagcctattttttatataaagggggcgaaaataatgaataagatatgtagaattttgat 62  Q
    ||||||||||| ||||||||||||||||||||||||||   || | |||||||||||||    
T  24806503 aagcctattttctatataaagggggcgaaaataatgaaggggacaagtagaattttgat 24806445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 18535522 - 18535465
Alignment:
Q  4 aagcctattttttatataaagggggcgaaaataatgaataagatatgtagaattttgat 62  Q
    ||||||||||  ||||||||||||||||||||||||||   || |||||||||||||||    
T  18535522 aagcctatttcctatataaagggggcgaaaataatgaa-gggacatgtagaattttgat 18535465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 6050308 - 6050268
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  6050308 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 6050268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 15409865 - 15409905
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  15409865 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 15409905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 6473 - 6589
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttacc 213  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| |||||||| |||||||||||||||||    
T  6473 gattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaattaaacatcttctttggattgggaatttgtttggttacc 6572  T
Q  214 attttccgcctatttcc 230  Q
    | |||| ||||||||||    
T  6573 aatttctgcctatttcc 6589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 6378 - 6422
Alignment:
Q  16 tatataaagggggcgaaaataatgaataagatatgtagaattttgat 62  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||    
T  6378 tatataaagggggcgaaaataatgaataag--aagtagaattttgat 6422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 374843 - 374740
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttacc 213  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| ||||||||||||||| |    
T  374843 gattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaattaaacatcttccttggattgggaatttgtttggttatc 374744  T
Q  214 attt 217  Q
    ||||    
T  374743 attt 374740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 47418089 - 47417986
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttacc 213  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| ||||||||||||||| |    
T  47418089 gattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaattaaacatcttccttggattgggaatttgtttggttatc 47417990  T
Q  214 attt 217  Q
    ||||    
T  47417989 attt 47417986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 16347206 - 16347309
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttacc 213  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| ||| ||||||||||| |    
T  16347206 gattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaattaaacatcttccttggattgggaacttgtttggttatc 16347305  T
Q  214 attt 217  Q
    ||||    
T  16347306 attt 16347309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 5554011 - 5553955
Alignment:
Q  4 aagcctattttttatataaagggggcgaaaataatgaataagatatgtagaattttg 60  Q
    ||||||||||  ||||||||||||||||||||||||||   || |||||||||||||    
T  5554011 aagcctatttcctatataaagggggcgaaaataatgaaggggagatgtagaattttg 5553955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 16347098 - 16347135
Alignment:
Q  4 aagcctattttttatataaagggggcgaaaataatgaa 41  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  16347098 aagcctatttcctatataaagggggcgaaaataatgaa 16347135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 47418196 - 47418159
Alignment:
Q  4 aagcctattttttatataaagggggcgaaaataatgaa 41  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  47418196 aagcctatttcctatataaagggggcgaaaataatgaa 47418159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 22271199 - 22271235
Alignment:
Q  128 ttgatcttatcaagaaaccacgtttcttgtggcgatc 164  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  22271199 ttgatcttatcaagaaatcacatttcttgtggcgatc 22271235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 48463755 - 48463666
Alignment:
Q  128 ttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttaccattt 217  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||||| |||||    
T  48463755 ttgatcttatcaagaaaccacgtttcttgtgtcgatcttctaccaaattaaatatcttccttggattgagaatttgtttggttatcattt 48463666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 48463156 - 48463245
Alignment:
Q  128 ttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttaccattt 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||| | ||||||||||||| ||||||||||||||| |||||    
T  48463156 ttgatcttatcaagaaaccacgtttcttgtgacgatcctctaccaaattaaacatcttccttggattgggaatttgtttggttatcattt 48463245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 40554456 - 40554559
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttacc 213  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||||||||||||| | || |||| | ||||||||||||| ||||||||||||||| |    
T  40554456 gattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctctatcgaattaaacatcttccttggattgggaatttgtttggttatc 40554555  T
Q  214 attt 217  Q
    ||||    
T  40554556 attt 40554559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 230
Target Start/End: Original strand, 20759638 - 20759798
Alignment:
Q  70 gtcacttcatttgaatttggaagctttgcttgttttttagttatgattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctcta 169  Q
    ||||||| || |||||||| ||||||||||| |||||   ||  |||| || ||||||||||||||||||| |||| || ||| || |||||||||||||    
T  20759638 gtcactttatgtgaatttgaaagctttgcttctttttggttttggattaaaccatgacttgatcttatcaaaaaactacattttttatggcgatcctcta 20759737  T
Q  170 ccaaactaaataacttccttggattgagaatttgtttggttaccattttccgcctatttcc 230  Q
    |||| ||||| | ||||||| ||||| || ||||||| |||||||||||| | ||||||||    
T  20759738 ccaagctaaacatcttccttagattgggattttgtttagttaccattttcggtctatttcc 20759798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 6473828 - 6473880
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||  |||||||||||||||||| ||| ||||||||| ||||||||    
T  6473828 gattgaatcatc-cttgatcttatcaagaaatcacatttcttgtgacgatcctc 6473880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 31390397 - 31390454
Alignment:
Q  5 agcctattttttatataaagggggcgaaaataatgaataagatatgtagaattttgat 62  Q
    |||||||||  ||||||||||||||||||||||||||   || | |||||||||||||    
T  31390397 agcctatttcctatataaagggggcgaaaataatgaaggggacaagtagaattttgat 31390454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 20127137 - 20127177
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  20127137 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 20127177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 22062230 - 22062190
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  22062230 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 22062190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 11099053 - 11099156
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttacc 213  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||| ||||| ||||||| |||| | ||||||||||||||||||||||||||||| |    
T  11099053 gattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcaatcctttaccaaattaaacatcttccttggattgagaatttgtttggttatc 11099152  T
Q  214 attt 217  Q
    ||||    
T  11099153 attt 11099156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 229
Target Start/End: Complemental strand, 24663550 - 24663391
Alignment:
Q  70 gtcacttcatttgaatttggaagctttgcttgttttttagttat-gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctct 168  Q
    ||||||| || |||||||||||||||| ||| ||||   ||| | ||||||| ||||| || |||||||||| |||||||||||||||||||||||||||    
T  24663550 gtcactttatgtgaatttggaagctttacttcttttgg-gttctagattgaaccatgaatttatcttatcaaaaaaccacgtttcttgtggcgatcctct 24663452  T
Q  169 accaaactaaataacttccttggattgagaatttgtttggttaccattttccgcctatttc 229  Q
    || || | | | | |||||||| ||||| |||||||||||||||||||||| |||||||||    
T  24663451 acgaagcaatacatcttccttgaattgaaaatttgtttggttaccattttctgcctatttc 24663391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 207
Target Start/End: Original strand, 19456514 - 19456607
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttg 207  Q
    ||||||||||||  ||||||||||||||| ||  ||||||||||||||||||||||| |||||||| | ||| ||| |||||||||||||||||    
T  19456514 gattgaatcatgctttgatcttatcaagatacttcgtttcttgtggcgatcctctacgaaactaaacatcttgcttagattgagaatttgtttg 19456607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 19459934 - 19460015
Alignment:
Q  128 ttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggt 209  Q
    |||||||||| |||||| || ||||||||||||||||||||||||| ||||| | || ||||||||||||||||||||||||    
T  19459934 ttgatcttataaagaaagcatgtttcttgtggcgatcctctaccaagctaaacatctaccttggattgagaatttgtttggt 19460015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 19460450 - 19460355
Alignment:
Q  115 attgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggtt 210  Q
    |||||| ||||  |||||||||||||||||| | |||||||||| ||| |||||||||| ||||| | ||||||| ||||||||||||||||||||    
T  19460450 attgaaccatgttttgatcttatcaagaaactatgtttcttgtgccgaccctctaccaagctaaacatcttccttagattgagaatttgtttggtt 19460355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 19180522 - 19180479
Alignment:
Q  128 ttgatcttatcaagaaaccacgtttcttgtggcgatcctctacc 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19180522 ttgatcttatcaagaaaccacgtttcttgtggcgatcctctacc 19180479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 21377708 - 21377751
Alignment:
Q  16 tatataaagggggcgaaaataatgaataagatatgtagaatttt 59  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  21377708 tatataaagggggcgaaaataatgaataagatatgtataatttt 21377751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 19458233 - 19458322
Alignment:
Q  128 ttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttaccattt 217  Q
    |||||||||| |||||||  ||||||||||| ||||| | | |||| ||||| | |||||||| |||| ||||||||| |||| ||||||    
T  19458233 ttgatcttataaagaaacttcgtttcttgtgacgatcgtatcccaagctaaacatcttccttgtattgggaatttgttgggtttccattt 19458322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 39488247 - 39488195
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||  |||||||||||||||||| ||  ||||||||||||||||||    
T  39488247 gattgaatcatc-cttgatcttatcaagaaatcatatttcttgtggcgatcctc 39488195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 9167251 - 9167291
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  9167251 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 9167291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 15019368 - 15019328
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  15019368 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 15019328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 42872655 - 42872627
Alignment:
Q  16 tatataaagggggcgaaaataatgaataa 44  Q
    |||||||||||||||||||||||||||||    
T  42872655 tatataaagggggcgaaaataatgaataa 42872627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 7754 - 7844
Alignment:
Q  128 ttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttaccatttt 218  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||| ||||||||||||||| ||||||    
T  7754 ttgatcttatcaagaaaccacgtttcttgtggagatcctctaccaaattaaacatcttccttggattgggaatttgtttggttatcatttt 7844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 27616 - 27653
Alignment:
Q  4 aagcctattttttatataaagggggcgaaaataatgaa 41  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  27616 aagcctatttcctatataaagggggcgaaaataatgaa 27653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 114 - 216
Target Start/End: Original strand, 241622 - 241724
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttacc 213  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||| ||||||||||||||| |    
T  241622 gattgaaccatgcgttgatcttatcaagaaaccacgtttcttgtggtgatcctctaccaaattaaacatcttccttggattgggaatttgtttggttatc 241721  T
Q  214 att 216  Q
    |||    
T  241722 att 241724  T

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Target: scaffold0013; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 241510 - 241568
Alignment:
Q  4 aagcctattttttatataaagggggcgaaaataatgaataagatatgtagaattttgat 62  Q
    ||||||||||  |||||| |||||||||||||||||||  ||| | |||||||||||||    
T  241510 aagcctatttcctatatatagggggcgaaaataatgaaggagacaagtagaattttgat 241568  T

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Target: scaffold0025 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 55433 - 55536
Alignment:
Q  114 gattgaatcatgacttgatcttatcaagaaaccacgtttcttgtggcgatcctctaccaaactaaataacttccttggattgagaatttgtttggttacc 213  Q
    ||||||| ||||  ||||||| ||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| ||| ||||||||||| |    
T  55433 gattgaaccatgcattgatctcatcaagaaaccacgtttcttgtggcgatcctctaccaaattaaacatcttccttggattgggaacttgtttggttatc 55532  T
Q  214 attt 217  Q
    ||||    
T  55533 attt 55536  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 16781091 - 16781148
Alignment:
Q  5 agcctattttttatataaagggggcgaaaataatgaataagatatgtagaattttgat 62  Q
    |||||||||| |||||||| | | |||||||||||||||||||||||| |||||||||    
T  16781091 agcctattttctatataaatgagacgaaaataatgaataagatatgtaaaattttgat 16781148  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 244526 - 244486
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  244526 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 244486  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 29950183 - 29950223
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  29950183 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 29950223  T

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Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 87043 - 87100
Alignment:
Q  5 agcctattttttatataaagggggcgaaaataatgaataagatatgtagaattttgat 62  Q
    |||||||||  |||||||||||||||||||||||||| | || | |||||||||||||    
T  87043 agcctatttcctatataaagggggcgaaaataatgaagaggacaagtagaattttgat 87100  T

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Target: scaffold0321 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 5709 - 5753
Alignment:
Q  16 tatataaagggggcgaaaataatgaataagatatgtagaattttgat 62  Q
    ||||||||||||||||||||||||||||  ||| |||||||||||||    
T  5709 tatataaagggggcgaaaataatgaata--ataagtagaattttgat 5753  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 12364366 - 12364323
Alignment:
Q  128 ttgatcttatcaagaaaccacgtttcttgtggcgatcctctacc 171  Q
    ||||||||||||| ||||| ||||||||||||||||||| ||||    
T  12364366 ttgatcttatcaaaaaaccgcgtttcttgtggcgatcctttacc 12364323  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 41000298 - 41000261
Alignment:
Q  4 aagcctattttttatataaagggggcgaaaataatgaa 41  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  41000298 aagcctatttcctatataaagggggcgaaaataatgaa 41000261  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 9595522 - 9595482
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  9595522 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 9595482  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 9646485 - 9646445
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  9646485 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 9646445  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 32706405 - 32706445
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||| ||||||||||| ||||||    
T  32706405 cttgatcttatcaagaaatcacatttcttgtggcaatcctc 32706445  T

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Target: scaffold0094 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 13095 - 13049
Alignment:
Q  16 tatataaagggggcgaaaataatgaataagatatgtagaattttgat 62  Q
    |||||||||||||||||||||||||| |||  | |||||||||||||    
T  13095 tatataaagggggcgaaaataatgaagaagggaagtagaattttgat 13049  T

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Target: scaffold0585 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 958 - 917
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctct 168  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  958 cttgatcttatcaagaaatcatatttcttgtggcgatcctct 917  T

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Target: scaffold0096 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 22700 - 22660
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  22700 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 22660  T

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Target: scaffold0075 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 25846 - 25806
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  25846 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 25806  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 136823 - 136863
Alignment:
Q  127 cttgatcttatcaagaaaccacgtttcttgtggcgatcctc 167  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  136823 cttgatcttatcaagaaatcatatttcttgtggcgatcctc 136863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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