View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10519_low_11 (Length: 244)
Name: NF10519_low_11
Description: NF10519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10519_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 31706535 - 31706295
Alignment:
| Q |
1 |
ttgaaatatagttggttagtccattcatcaaatgctttcattcatttcaggtgatgctgaaaatgaaaagcagacatgttgcaggaaccattacnnnnnn |
100 |
Q |
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| T |
31706535 |
ttgaaatatagttggttagtccattcatcaaatgcttgcattcatttcaggtgatgctgaaaatgaaaagcagacatgttgcaggaaccattacaaaaaa |
31706436 |
T |
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| Q |
101 |
nnnnnngagtaagctataacaatatataacttaatttttccttgcaatatcata----------------tgattataaacatgatatttttaccagata |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
31706435 |
gaaaaagagtaagctataacaatatataacttaatttttccttgcaatatcatagaaataacaaatcattttattataaacatgatatttttaccagata |
31706336 |
T |
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| Q |
185 |
ttgtgttggatgtgtgcacaaatttaccagcttggccagga |
225 |
Q |
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| T |
31706335 |
ttgtgttggatgtgtgcacaaatttaccagcttggccagga |
31706295 |
T |
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Back To:
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 38269548 - 38269593
Alignment:
| Q |
43 |
catttcaggtgatgctgaaaatgaaaagcagacatgttgcaggaac |
88 |
Q |
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|||||||||| |||||||||||||| |||| ||||||||||||||| |
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| T |
38269548 |
catttcaggtaatgctgaaaatgaagagcaaacatgttgcaggaac |
38269593 |
T |
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