View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10519_low_13 (Length: 241)
Name: NF10519_low_13
Description: NF10519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10519_low_13 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 5286688 - 5286911
Alignment:
| Q |
18 |
tgaactatattccctcaatttatttataatctttattttccaataagtcattactcatcgcttcatcttgataatctttgtgaggaactcttcctgcaac |
117 |
Q |
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| T |
5286688 |
tgaactatattccctcaatttatttataatctttattttccaataagtcattactcatcgcttcatcctgataatctttgtgaggaactcttcctgcaac |
5286787 |
T |
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| Q |
118 |
tagaccaatattcagctaccagcttagagaatgatgagtttgtatccattagctttgaaggctcatcatattccacaagtttccctttaataaaccagca |
217 |
Q |
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| T |
5286788 |
tagaccaatattcagctaccagcttagagaatgatgagtttgtatccattagctttgaaggctcatcatattccacaagtttccctttaataaaccagca |
5286887 |
T |
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| Q |
218 |
aaaaattatgaggcaaaaatagaa |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
5286888 |
aaaaattatgaggcaaaaatagaa |
5286911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 100 - 241
Target Start/End: Complemental strand, 5310406 - 5310263
Alignment:
| Q |
100 |
aggaactcttcctgcaactagaccaatattcagctaccagcttagagaatgatgagtttgtatccattagctttgaaggctcatcatattccacaagttt |
199 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
5310406 |
aggaactcttcctgcagctagaccaatattcagctaccaacttagagaatgaagagtttgtgttcattagctttgaaggctcatcatattccacaagttt |
5310307 |
T |
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| Q |
200 |
ccctttaata--aaccagcaaaaaattatgaggcaaaaatagaa |
241 |
Q |
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| T |
5310306 |
ccctataataataaccagaaaaaaattacgaggcaaaaatagaa |
5310263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 101 - 233
Target Start/End: Original strand, 5279011 - 5279145
Alignment:
| Q |
101 |
ggaactcttcctgcaactagaccaatattcagctaccagcttagagaatgatgagtttgtatccattagctttgaaggctcatcatattccacaagtttc |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
5279011 |
ggaattcttcctgcaactagaccaatattcagctaccagcttagagaatgaagagtttgtgtccattagctttgaaggctcatcatattccaccagtttc |
5279110 |
T |
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| Q |
201 |
cctttaataa--accagcaaaaaattatgaggcaa |
233 |
Q |
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|||||||| | |||||| |||||||||||||||| |
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| T |
5279111 |
cctttaattatgaccagccaaaaattatgaggcaa |
5279145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 101 - 230
Target Start/End: Complemental strand, 15129043 - 15128915
Alignment:
| Q |
101 |
ggaactcttcctgcaactagaccaatattcagctaccagcttagagaatgatgagtttgtatccattagctttgaaggctcatcatattccacaagtttc |
200 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15129043 |
ggaattcttcctgcagctagaccaatattcagctaccagcttagagaatgaagagttggtatccattagctttgaaggctcatcatattccaccagtttc |
15128944 |
T |
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| Q |
201 |
cctttaataaaccagcaaaaaattatgagg |
230 |
Q |
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||||||| |||||||| |||||||| |||| |
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| T |
15128943 |
cctttaa-aaaccagccaaaaattacgagg |
15128915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 27 - 210
Target Start/End: Original strand, 14945964 - 14946148
Alignment:
| Q |
27 |
ttccctcaatttatttataatctttattttccaataagtcattactcatcgcttcatcttgataatctttgtg-aggaactcttcctgcaactagaccaa |
125 |
Q |
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|||| ||||||||||||||| | ||||||| || ||| ||||| |||| | | | || || |||| |||| | |||||||||||||||| || |||||| |
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| T |
14945964 |
ttccttcaatttatttataagcattattttgcattaaaccattattcattgatgcttcctgctaatatttgggaaggaactcttcctgcagctggaccaa |
14946063 |
T |
|
| Q |
126 |
tattcagctaccagcttagagaatgatgagtttgtatccattagctttgaaggctcatcatattccacaagtttccctttaataa |
210 |
Q |
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| T |
14946064 |
tattcagctaccagcttagagaatgaagagttggtatccattagctttgaaggttcatcatattccaccagtttccctttaataa |
14946148 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 108 - 233
Target Start/End: Complemental strand, 5317076 - 5316949
Alignment:
| Q |
108 |
ttcctgcaactagaccaatattcagctaccagcttagagaatgatgagtttgtatccattagctttgaaggctcatcatattccacaagtttccctttaa |
207 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
5317076 |
ttcctgcagctagaccaatattcagctaccagcttagagaatgaagagtttgtgtccattagctttgaaggctcatcatattccatcactttccctttaa |
5316977 |
T |
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| Q |
208 |
taa--accagcaaaaaattatgaggcaa |
233 |
Q |
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| | |||||| |||||||||||||||| |
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| T |
5316976 |
ttatgaccagccaaaaattatgaggcaa |
5316949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 100 - 203
Target Start/End: Complemental strand, 5299528 - 5299420
Alignment:
| Q |
100 |
aggaactcttcctgcaactagaccaatattcagctacc-----agcttagagaatgatgagtttgtatccattagctttgaaggctcatcatattccaca |
194 |
Q |
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|||||| ||||||||| ||||||||||||||||||||| | |||||||| ||| |||||||| | ||||||||||||||||||||||||||||||| |
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| T |
5299528 |
aggaacccttcctgcagctagaccaatattcagctaccaacttaacttagagactgaagagtttgtgttcattagctttgaaggctcatcatattccaca |
5299429 |
T |
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| Q |
195 |
agtttccct |
203 |
Q |
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||||||||| |
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| T |
5299428 |
agtttccct |
5299420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 31523059 - 31523164
Alignment:
| Q |
101 |
ggaactcttcctgcaactagaccaatattcagctaccagcttagagaatgatgagtttgtatccattagctttgaaggctcatcatattccacaagtttc |
200 |
Q |
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|||||||||| || | ||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||| |
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| T |
31523059 |
ggaactcttcttgtagctagaccaatactcagctaccagcttagagaatgaagagttggtttccattagctttgaaggctcatcatattccaccagtttc |
31523158 |
T |
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| Q |
201 |
ccttta |
206 |
Q |
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|||||| |
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|
| T |
31523159 |
ccttta |
31523164 |
T |
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