View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10519_low_18 (Length: 227)
Name: NF10519_low_18
Description: NF10519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10519_low_18 |
 | |
|
| [»] scaffold0094 (1 HSPs) |
| | |
|
| [»] scaffold0321 (1 HSPs) |
| | |
|
| [»] scaffold0139 (2 HSPs) |
| | |
|
| [»] scaffold0180 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6777867 - 6778087
Alignment:
| Q |
1 |
aaaagcttacaatcatagcatgattaataaaataactctgatggggttaattattgcaaagaaaaggttacagattaattggttttgatttaagatggct |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6777867 |
aaaagcttacggtcatagcatgattaataaaataactttgatggggttaattattgcaaagaaaaggttacagattaattggttttgatttaagatggct |
6777966 |
T |
|
| Q |
101 |
gcatcaatgcttgaagtaacatactcatggttgttactttttgacaatttgcagcgccctctctcctccatattatgctcttcaactcctcatattgatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6777967 |
gcatcaatgcttgaagtaacatactcatggttgttactttttgacaatttgcagcgccctctctcctccatattatgctcttcaactcctcatattgatt |
6778066 |
T |
|
| Q |
201 |
attttgcacctcctttgcttc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
6778067 |
attttgcacctcctttgcttc |
6778087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 17857631 - 17857447
Alignment:
| Q |
1 |
aaaagcttacaatcatagcatgattaataaaataactctgatggggttaattattgcaaagaaaaggttacagattaattggttttgatttaagatggct |
100 |
Q |
| |
|
||||||||| ||| ||| || ||||||| |||||||||| ||| || |||||||||||| ||||| |||||| ||| ||||||||||||||| | ||||| |
|
|
| T |
17857631 |
aaaagcttagaattatatcaagattaatgaaataactcttatgtggctaattattgcaa-gaaaatgttacaaatttattggttttgatttagg-tggct |
17857534 |
T |
|
| Q |
101 |
gcatcaatgcttgaagtaacatactcatggttgttactttttgacaatttgcagcgccctctctcctccatattatgctcttcaact |
187 |
Q |
| |
|
| |||||| || |||| ||| ||||||||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||| |
|
|
| T |
17857533 |
gaatcaattctcaaagttacacactcatggttgttacttttggacaatttttagcgtcctctctcctccactttatgctcttcaact |
17857447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 16781081 - 16780863
Alignment:
| Q |
1 |
aaaagcttacaatcatagcatgattaataaaataactctgatggggttaattattgcaaagaaaaggttacagattaattggttttgatttaagatggct |
100 |
Q |
| |
|
|||| |||||||| ||| |||||||||| |||||||||| ||| || |||||||| ||| |||||||||||| ||||||||||||||||| ||| | ||| |
|
|
| T |
16781081 |
aaaatcttacaattatatcatgattaatgaaataactcttatgtggctaattattacaa-gaaaaggttacaaattaattggttttgattcaaggttgct |
16780983 |
T |
|
| Q |
101 |
gcatcaatgcttgaagtaacatactcatggttgttac-tttttgacaatttgcagcgccctctctcctccatattatgctcttcaactcctcatattgat |
199 |
Q |
| |
|
|||||||| |||||| | ||| ||||| || |||||| |||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
16780982 |
gcatcaattcttgaatttacacactcaaggctgttacgtttttgtcaatttgcagcgccctctc--ctccacattatgctcttcaactcctcatattgat |
16780885 |
T |
|
| Q |
200 |
tattttgcacctcctttgcttc |
221 |
Q |
| |
|
|| |||||||||| |||||||| |
|
|
| T |
16780884 |
tactttgcacctcttttgcttc |
16780863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 13116 - 13335
Alignment:
| Q |
1 |
aaaagcttacaatcatagcatgattaataaaataactctgatggggttaattattgcaaagaaaaggttacagattaattggttttgatttaagatggct |
100 |
Q |
| |
|
||||||||||||| ||| |||||||||| |||||||||| ||| || |||||||||||| |||| | ||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
13116 |
aaaagcttacaattatatcatgattaatgaaataactcttatgtggctaattattgcaaggaaatg-ttacaaatttattggttttgatttaaggtggct |
13214 |
T |
|
| Q |
101 |
gcatcaatgcttgaagtaacatactcatggttgttactttttgacaatttgcagcgccctctctcctccatattatgctcttcaactcctcatattgatt |
200 |
Q |
| |
|
| ||||| || ||||| ||| ||| |||| |||||||||| |||||||| |||| ||||||||||||| ||||||| |||||||| |||| ||| ||| |
|
|
| T |
13215 |
gaatcaagtctcgaagttacacactaatggctgttacttttggacaattttcagcttcctctctcctccacattatgcacttcaactactcaaattaatt |
13314 |
T |
|
| Q |
201 |
attttgcacctcctttgcttc |
221 |
Q |
| |
|
| || |||||| |||||||| |
|
|
| T |
13315 |
gtgtttcacctcttttgcttc |
13335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 5688 - 5504
Alignment:
| Q |
1 |
aaaagcttacaatcatagcatgattaataaaataactctgatggggttaattattgcaaagaaaaggttacagattaattggttttgatttaagatggct |
100 |
Q |
| |
|
||||||||||||| ||| || ||||||| |||||||||| ||| || |||||||||||| |||| | ||||| ||| ||||||||||| ||| | ||||| |
|
|
| T |
5688 |
aaaagcttacaattatatcaagattaatgaaataactcttatgtggctaattattgcaaggaaatg-ttacaaatttattggttttgaattagg-tggct |
5591 |
T |
|
| Q |
101 |
gcatcaatgcttgaagtaacatactcatggttgttactttttgacaatttgcagcgccctctctcctccatattatgctcttcaact |
187 |
Q |
| |
|
| |||||| || |||| ||| |||||| | |||||||||| |||||||| ||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
5590 |
gaatcaattctcaaagttacacactcatagctgttacttttggacaattttcagcgtcctctctcctccactttatgctcttcaact |
5504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0139 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0139
Description:
Target: scaffold0139; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4691 - 4479
Alignment:
| Q |
1 |
aaaagcttacaatcatagcatgattaataaaataactctgatggggttaattattgcaaagaaaaggttacagattaattggttttgatttaagatggct |
100 |
Q |
| |
|
||||||||||| | ||| || ||||||| |||||||||| ||| || |||||||||||| |||| | ||||| ||| |||||||||||| |||| |
|
|
| T |
4691 |
aaaagcttacagttatatcaagattaatgaaataactcttatgtggctaattattgcaaggaaatg-ttacaaatttattggttttgat-------ggct |
4600 |
T |
|
| Q |
101 |
gcatcaatgcttgaagtaacatactcatggttgttactttttgacaatttgcagcgccctctctcctccatattatgctcttcaactcctcatattgatt |
200 |
Q |
| |
|
| |||||| || |||| ||| |||||||| |||||||||| |||||||| |||| ||||||||||||| |||||||||||||||| |||| ||| ||| |
|
|
| T |
4599 |
gaatcaattctcaaagttacacactcatggctgttacttttggacaattttcagcatcctctctcctccacattatgctcttcaactactcaaattaatt |
4500 |
T |
|
| Q |
201 |
attttgcacctcctttgcttc |
221 |
Q |
| |
|
| || || ||| |||||||| |
|
|
| T |
4499 |
gtgtttcagctcttttgcttc |
4479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0139; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 6357 - 6270
Alignment:
| Q |
1 |
aaaagcttacaatcatagcatgattaataaaataactctgatggggttaattattgcaaagaaaaggttacagattaattggttttgat |
89 |
Q |
| |
|
||||||||||| | ||| || ||||||| |||||||||| ||| || ||||||||| ||| ||| |||||| ||| |||||||||||| |
|
|
| T |
6357 |
aaaagcttacagttatatcaagattaatgaaataactcttatgtggctaattattg-taaggaaatgttacaaatttattggttttgat |
6270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 18280963 - 18281141
Alignment:
| Q |
1 |
aaaagcttacaatcatagcatgattaataaaataactctgatggggttaattattgcaaagaaaaggttacagattaattggttttgatttaagatggct |
100 |
Q |
| |
|
|||||| |||||| ||| || ||||||| |||||||||| ||| || |||||||||||| |||| | ||||| ||| |||||||||||| |||| |
|
|
| T |
18280963 |
aaaagcatacaattatatcaagattaatgaaataactcttatgtggctaattattgcaaggaaatg-ttacaaatttattggttttgat-------ggct |
18281054 |
T |
|
| Q |
101 |
gcatcaatgcttgaagtaacatactcatggttgttactttttgacaatttgcagcgccctctctcctccatattatgctcttcaact |
187 |
Q |
| |
|
| |||||| || |||| ||| || ||||| | |||||||| |||||||| ||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
18281055 |
gaatcaattctcaaagttacacacccatggctattacttttggacaattttcagcgtcctctctcctccacattatgctcttcaact |
18281141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 21377687 - 21377559
Alignment:
| Q |
1 |
aaaagcttacaatcatagcatgattaataaaataactctgatggggttaattattgcaaagaaaaggttacagattaattggttttgatttaagatggct |
100 |
Q |
| |
|
||||||||||||| ||| |||||||||| |||||||||| ||| | |||||||||||| | ||| |||||| ||| ||||||||||||||||| |||| |
|
|
| T |
21377687 |
aaaagcttacaattatatcatgattaatgaaataactcttatgtagctaattattgcaatg-aaatgttacaaatttattggttttgatttaaggcggct |
21377589 |
T |
|
| Q |
101 |
gcatcaatgcttgaagtaacatactcatgg |
130 |
Q |
| |
|
| |||||| || ||||| ||| |||||||| |
|
|
| T |
21377588 |
gaatcaattctcgaagttacacactcatgg |
21377559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 11098937 - 11098847
Alignment:
| Q |
1 |
aaaagcttacaatcatagcatgattaataaaataactctgatggggttaattattgcaaagaaaaggttacagattaattggttttgattta |
92 |
Q |
| |
|
||||||||||||| ||| || ||||||| |||||||||| ||| || |||||||||| ||| ||| |||||| ||| ||||||||||||||| |
|
|
| T |
11098937 |
aaaagcttacaattatatcaagattaatgaaataactcttatgtggctaattattgc-aaggaaatgttacaaatttattggttttgattta |
11098847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 11098844 - 11098785
Alignment:
| Q |
128 |
tggttgttactttttgacaatttgcagcgccctctctcctccatattatgctcttcaact |
187 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||||| |||| ||||||||||||||| |
|
|
| T |
11098844 |
tggttgttacttttggacaattttcagcgtcctctctcatccactttatgctcttcaact |
11098785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 42872676 - 42872766
Alignment:
| Q |
1 |
aaaagcttacaatcatagcatgattaataaaataactctgatggggttaattattgcaaagaaaaggttacagattaattggttttgattta |
92 |
Q |
| |
|
|||| |||||||| ||| || ||||||| |||||||||| ||| || |||||||||| ||| ||| |||||| ||| ||||||||||||||| |
|
|
| T |
42872676 |
aaaaacttacaattatatcaagattaatgaaataactcttatgtggctaattattgc-aaggaaatgttacaaatttattggttttgattta |
42872766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 21377544 - 21377455
Alignment:
| Q |
132 |
tgttactttttgacaatttgcagcgccctctctcctccatattatgctcttcaactcctcatattgattattttgcacctcctttgcttc |
221 |
Q |
| |
|
|||||||||| |||||||| ||||| ||| |||||||| |||||||||||||||| |||| ||| ||| | || ||| || |||||||| |
|
|
| T |
21377544 |
tgttacttttggacaattttcagcgtcctaactcctccacattatgctcttcaactactcaaattaattgtgtttcacttcttttgcttc |
21377455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 42872773 - 42872828
Alignment:
| Q |
132 |
tgttactttttgacaatttgcagcgccctctctcctccatattatgctcttcaact |
187 |
Q |
| |
|
|||||||||| |||||||| ||| | ||||||||||||| ||||||||||||||| |
|
|
| T |
42872773 |
tgttacttttggacaattttcagtgtcctctctcctccactttatgctcttcaact |
42872828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0180 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0180
Description:
Target: scaffold0180; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 221
Target Start/End: Original strand, 11046 - 11228
Alignment:
| Q |
31 |
aataactctgatggggttaattattgcaaagaaaaggttacagattaattggttttgatttaagatggctgcatcaatgcttgaagtaacatactcatgg |
130 |
Q |
| |
|
||||||||| ||| || |||||||||||| |||| | ||||| ||| |||||||||||| ||||| |||||| || |||| ||| |||||||| |
|
|
| T |
11046 |
aataactcttatgtggctaattattgcaaggaaatg-ttacaaatttattggttttgat-------ggctgaatcaattctcaaagttacacactcatgg |
11137 |
T |
|
| Q |
131 |
ttgttactttttgacaatttgcagcgccctctctcctccatattatgctcttcaactcctcatattgattattttgcacctcctttgcttc |
221 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||||||||| ||||||||||| |||| |||| ||| ||| | || || ||| |||||||| |
|
|
| T |
11138 |
ctgttacttttggacaattttcagcatcctctctcctccacattatgctcttaaactactcaaattaattgtgtttcagctcttttgcttc |
11228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 44793053 - 44793143
Alignment:
| Q |
1 |
aaaagcttacaatcatagcatgattaataaaataactctgatggggttaattattgcaaagaaaaggttacagattaattggttttgattta |
92 |
Q |
| |
|
||||||||||||| ||| || ||||||| |||||||||| ||| || |||||||||| ||| ||| |||||| ||| ||||||||||||||| |
|
|
| T |
44793053 |
aaaagcttacaattatatcaagattaatgaaataactcttatgtggctaattattgc-aaggaaatgttacaaatttattggttttgattta |
44793143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 44793152 - 44793205
Alignment:
| Q |
134 |
ttactttttgacaatttgcagcgccctctctcctccatattatgctcttcaact |
187 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
44793152 |
ttacttttggacaattttcagcgtcctctctcctccactttatgctcttcaact |
44793205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 40554339 - 40554249
Alignment:
| Q |
1 |
aaaagcttacaatcatagcatgattaataaaataactctgatggggttaattattgcaaagaaaaggttacagattaattggttttgattta |
92 |
Q |
| |
|
||||||||||||| ||| || ||||||| |||||||||| ||| || |||||||||| ||| ||| |||||| ||| ||||||||||||||| |
|
|
| T |
40554339 |
aaaagcttacaattatatcaagattaatgaaataactcttatgtggctaattattgc-aaggaaatgttacaaatttattggttttgattta |
40554249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 40554242 - 40554187
Alignment:
| Q |
132 |
tgttactttttgacaatttgcagcgccctctctcctccatattatgctcttcaact |
187 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||| |||| ||||||||||||||| |
|
|
| T |
40554242 |
tgttacttttggacaattttcagcgtcctctctcatccactttatgctcttcaact |
40554187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 374961 - 375051
Alignment:
| Q |
1 |
aaaagcttacaatcatagcatgattaataaaataactctgatggggttaattattgcaaagaaaaggttacagattaattggttttgattta |
92 |
Q |
| |
|
||||||||||||| ||| || ||||||| |||||||| | ||| || |||||||||| ||| ||| |||||| ||| ||||||||||||||| |
|
|
| T |
374961 |
aaaagcttacaattatatcaagattaatgaaataacttttatgtggctaattattgc-aaggaaatgttacaaatttattggttttgattta |
375051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 375058 - 375113
Alignment:
| Q |
132 |
tgttactttttgacaatttgcagcgccctctctcctccatattatgctcttcaact |
187 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||| |||| ||||||||||||||| |
|
|
| T |
375058 |
tgttacttttggacaattttcagcgtcctctctcatccactttatgctcttcaact |
375113 |
T |
|
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