View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10519_low_19 (Length: 227)
Name: NF10519_low_19
Description: NF10519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10519_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5287166 - 5286942
Alignment:
| Q |
1 |
ttggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacagcatccattgactct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5287166 |
ttggagcttgggacaaaggcaattgttttgccttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacagcatccattgactct |
5287067 |
T |
|
| Q |
101 |
gcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacagtgaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5287066 |
gcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacagtgaca |
5286967 |
T |
|
| Q |
201 |
tggtcatggtcctatcttatggtat |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
5286966 |
tggtcatggtcctatcttatggtat |
5286942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5310008 - 5310232
Alignment:
| Q |
1 |
ttggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacagcatccattgactct |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || || || ||||||||| |
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| T |
5310008 |
ttggagcttgagacaaaggcaattgttttgtcttggaagagttctacttaagagaaacaaaattcttgttctggatgaagctactgcctctattgactct |
5310107 |
T |
|
| Q |
101 |
gcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacagtgaca |
200 |
Q |
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|
| || |||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5310108 |
tccacagatgcaatactacaaagagtaattagacaagaatttgcagaatgcacagtcataactgtggctcacagagttccaactgtcatagacagtgaca |
5310207 |
T |
|
| Q |
201 |
tggtcatggtcctatcttatggtat |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
5310208 |
tggtcatggtcctatcttatggtat |
5310232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5316656 - 5316880
Alignment:
| Q |
1 |
ttggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacagcatccattgactct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| || || |||||||||||| |
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| T |
5316656 |
ttggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagaggaacaggattctagttctggatgaagctactgcctccattgactct |
5316755 |
T |
|
| Q |
101 |
gcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacagtgaca |
200 |
Q |
| |
|
|| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| |||||||||||||||| ||||||| |
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|
| T |
5316756 |
gccacagatgccattctacaaagagtaattagacaagaattttcagaatgcacggttataaccgttgctcacagaattccaactgtaatagatagtgaca |
5316855 |
T |
|
| Q |
201 |
tggtcatggtcctatcttatggtat |
225 |
Q |
| |
|
||||||||||| ||||||||||||| |
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|
| T |
5316856 |
tggtcatggtcttatcttatggtat |
5316880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5279439 - 5279215
Alignment:
| Q |
1 |
ttggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacagcatccattgactct |
100 |
Q |
| |
|
||||||||| ||||| ||||| ||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
5279439 |
ttggagcttaggacagcggcaactgttttgccttggaagagttctacttaaaagaaatagaattcttgttctagatgaagcaacagcatccattgactca |
5279340 |
T |
|
| Q |
101 |
gcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacagtgaca |
200 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5279339 |
gccacagatgcaattctacaaagagtaattagacaagaattcgaagaatgcacagttataactgtggctcacagagttccaactgtaatagacagtgaca |
5279240 |
T |
|
| Q |
201 |
tggtcatggtcctatcttatggtat |
225 |
Q |
| |
|
|||| ||||| ||||||||||||| |
|
|
| T |
5279239 |
tggttctggtcttatcttatggtat |
5279215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 15128640 - 15128864
Alignment:
| Q |
1 |
ttggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacagcatccattgactct |
100 |
Q |
| |
|
|||||||||||||||| | ||||| ||||| || ||||||||||||||||| || ||||||||||||||| |||||||||| || ||||||||||| || |
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|
| T |
15128640 |
ttggagcttgggacaacgccaattattttgcctcggaagagttctacttaaaaggaacagaattcttgttttggatgaagctactgcatccattgattca |
15128739 |
T |
|
| Q |
101 |
gcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacagtgaca |
200 |
Q |
| |
|
|| || ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
15128740 |
gccacagatgcgattctacaaagaataattagacaagaatttgaagaatgcacagttataactgttgctcacagagttccaactgtaatagacagtgaca |
15128839 |
T |
|
| Q |
201 |
tggtcatggtcctatcttatggtat |
225 |
Q |
| |
|
|||||||||| |||||||||||||| |
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|
| T |
15128840 |
tggtcatggttctatcttatggtat |
15128864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 14946440 - 14946216
Alignment:
| Q |
1 |
ttggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacagcatccattgactct |
100 |
Q |
| |
|
|||||||||||||||| | ||||||||||| || |||||||||||||||||||| |||| |||||||||| |||| ||||| || ||||||||||| || |
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|
| T |
14946440 |
ttggagcttgggacaacgccaattgttttgcctcggaagagttctacttaagaggaacaaaattcttgttttggacgaagctactgcatccattgattca |
14946341 |
T |
|
| Q |
101 |
gcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacagtgaca |
200 |
Q |
| |
|
|| || ||||| |||||||||||| |||| |||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
14946340 |
gccacagatgccattctacaaagaataatcagacaagagtttgaagaatgcacagttataactgttgctcacagagttccaactgtaatagacagtgaca |
14946241 |
T |
|
| Q |
201 |
tggtcatggtcctatcttatggtat |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
14946240 |
tggtcatggtcctatcttatggtat |
14946216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5348124 - 5347901
Alignment:
| Q |
1 |
ttggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacagcatccattgactct |
100 |
Q |
| |
|
||||||| |||| ||||| ||||||||||| ||||||||||| || ||||| ||||| | |||||| ||| |||||||||| || || || ||||| ||| |
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|
| T |
5348124 |
ttggagcatgggccaaagacaattgttttgccttggaagagtccttcttaaaagaaataaaattctagttttggatgaagctactgcctctattgattct |
5348025 |
T |
|
| Q |
101 |
gcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacagtgaca |
200 |
Q |
| |
|
|| || ||||| |||||||||| | ||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| || |||||||| | |
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|
| T |
5348024 |
gccacagatgctattctacaaaaaataattagacaagaatttgcagaatgcacagttataactgtagctcatagagttccaactgttattgacagtgata |
5347925 |
T |
|
| Q |
201 |
tggtcatggtcctatcttatggta |
224 |
Q |
| |
|
|||||||||| || |||||||||| |
|
|
| T |
5347924 |
tggtcatggttctttcttatggta |
5347901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 31523585 - 31523384
Alignment:
| Q |
24 |
tgttttgtcttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacagcatccattgactctgcgacggatgcaattctacaaag |
123 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |||| |||| | ||||| |||||||| ||||| |||||||||||||| || ||||| ||||||||||| |
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|
| T |
31523585 |
tgttttgtcttggaagagtactactcaagaggaacaaaattttagttctagatgaagctacagcctccattgactctgccacagatgccattctacaaag |
31523486 |
T |
|
| Q |
124 |
agtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacagtgacatggtcatggtcctatcttatggt |
223 |
Q |
| |
|
||||||||||||||||||| |||||||||| || ||||| | ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
31523485 |
agtaattagacaagaatttgcagaatgcactgtaataaccattgctcacagaattccaactgtaatagacagtgacatggtcatgatcctatcttatggt |
31523386 |
T |
|
| Q |
224 |
at |
225 |
Q |
| |
|
|| |
|
|
| T |
31523385 |
at |
31523384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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