View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10519_low_20 (Length: 207)
Name: NF10519_low_20
Description: NF10519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10519_low_20 |
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| [»] scaffold0040 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 9169203 - 9169378
Alignment:
| Q |
15 |
agagagaagagagggtgaaaagaaaaacttgcagttgctgttggtggtggtggtgcgagtaagacatggagaggaagagagaaggatgatggaaatctag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9169203 |
agagagaagagagggtgaaaagaaaaacttgcagttgctgttggtggtggtggtgcgagtaagacatggagaggaagagagaaggatgatggaaatttag |
9169302 |
T |
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| Q |
115 |
tgttgagagagtacagtaacaatatggtcttcaaaaaatttcaaatacttccaatggttaatatctattttacatg |
190 |
Q |
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| T |
9169303 |
tgttgagagagtacagtaacagtatggtcttcaaaaaatttcaaatacttccaatggttaatatctattttacatg |
9169378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 21219910 - 21219733
Alignment:
| Q |
15 |
agagagaagagagggtgaaaagaaaaacttgcagttgctgttggtggtggtggtg--cgagtaagacatggag-aggaagagagaaggatgatggaaatc |
111 |
Q |
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| T |
21219910 |
agagagaagagagggtgaaaagaaaaacttgcagttgctgttggtggtggtggtgggcgagtaagacatggaggaggaagagagaaggatgatggaaatc |
21219811 |
T |
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| Q |
112 |
tagtgttgagagagtacagtaacaatatggtcttcaaaaaatttcaaatacttccaatggttaatatctattttacat |
189 |
Q |
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| T |
21219810 |
tagtgttgagagagtatagtaatagtatggtcttcaaaaaatttcaaatacatccaatggttaatatctattttacat |
21219733 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 2704302 - 2704223
Alignment:
| Q |
109 |
atctagtgttgagagagtacagtaacaatatggtcttcaaaaaatttcaaatacttccaatggttaatatctattttaca |
188 |
Q |
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| T |
2704302 |
atctagcgttgagagagtataataatatcatggtcatcagaaaattttaaatatatccaatggttaatatctattttaca |
2704223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 12653863 - 12653802
Alignment:
| Q |
112 |
tagtgttgagagagtacagtaacaatatggtcttcaaaaaatttcaaatacttccaatggtt |
173 |
Q |
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| T |
12653863 |
tagtgttgagagagtatgataataccatggtcttcaaaaaatttcaagtacatccaatggtt |
12653802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 37625781 - 37625720
Alignment:
| Q |
112 |
tagtgttgagagagtacagtaacaatatggtcttcaaaaaatttcaaatacttccaatggtt |
173 |
Q |
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| T |
37625781 |
tagtgttgagagagtatgataataccatggtcttcaaaaaatttcaagtacatccaatggtt |
37625720 |
T |
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Target: scaffold0040 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 68404 - 68325
Alignment:
| Q |
109 |
atctagtgttgagagagtacagtaacaatatggtcttcaaaaaatttcaaatacttccaatggttaatatctattttaca |
188 |
Q |
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| T |
68404 |
atctagtgttgagagagtataataatatcatgatcttcaaaagtttttaaatatatccaatggttaacatctattttaca |
68325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 7253059 - 7253138
Alignment:
| Q |
109 |
atctagtgttgagagagtacagtaacaatatggtcttcaaaaaatttcaaatacttccaatggttaatatctattttaca |
188 |
Q |
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| T |
7253059 |
atctagtgttgagagagtataataatatcatggtcatcaaaagttttcaaatatatccaatgattaacatctattttaca |
7253138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 45274949 - 45275010
Alignment:
| Q |
112 |
tagtgttgagagagtacagtaacaatatggtcttcaaaaaatttcaaatacttccaatggtt |
173 |
Q |
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| T |
45274949 |
tagtgttgagagagtatgataataccatggtcttcaaaaaatttcaagtacatccaatggtt |
45275010 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 1366224 - 1366267
Alignment:
| Q |
142 |
tcttcaaaaaatttcaaatacttccaatggttaatatctatttt |
185 |
Q |
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| T |
1366224 |
tctttaaaaaatttcaaatacatctaatggttaatatctatttt |
1366267 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 43526965 - 43526922
Alignment:
| Q |
142 |
tcttcaaaaaatttcaaatacttccaatggttaatatctatttt |
185 |
Q |
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| T |
43526965 |
tctttaaaaaatttcaaatacatctaatggttaatatctatttt |
43526922 |
T |
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