View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10519_low_3 (Length: 338)
Name: NF10519_low_3
Description: NF10519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10519_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 22 - 325
Target Start/End: Original strand, 36348384 - 36348687
Alignment:
| Q |
22 |
atggttgttattattgttgttgaagggtcttaatccaaaccctccattttgaatgatttcttgttccttttgtgatcggtcagacgatgttaagcaacta |
121 |
Q |
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| T |
36348384 |
atggttgttattattgttgttgaagtgtcttaatccaaaccctccattttgaatgatctcttgttccttttgtgatcggtcagacgatgttaagcaacta |
36348483 |
T |
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| Q |
122 |
ctgtccatcgagccgtcgtttggttgaggacaaaatccttgtaactctttcatctctgaaaatgttgaattcagacactgtgaggatacttttgacacaa |
221 |
Q |
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| T |
36348484 |
ctgtccatcgagccgtcgtttggttgaggacaaaatccttgtaactctttcatctctgaaaatgttgaattcagacactgtgaggatacttttgacacaa |
36348583 |
T |
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| Q |
222 |
gctctgatagttgaacttttgctgcttcaagccctactattcctaaattctgtctaccaagtgtttcttgagctttttcaagcactgattgaaggtattt |
321 |
Q |
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| T |
36348584 |
gctctgatagttgaacttttgctgcttcaagccctactattcctaaattctgtctaccaagtgtttcttgagctttttcaagcactgattgaaggtattt |
36348683 |
T |
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| Q |
322 |
ccct |
325 |
Q |
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|||| |
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| T |
36348684 |
ccct |
36348687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 325
Target Start/End: Original strand, 10292293 - 10292356
Alignment:
| Q |
262 |
tcctaaattctgtctaccaagtgtttcttgagctttttcaagcactgattgaaggtatttccct |
325 |
Q |
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| T |
10292293 |
tcctaaattttgtcttcctagtgtttccttagctttttcaagcactgattgaaggtacttccct |
10292356 |
T |
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