View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10519_low_4 (Length: 296)

Name: NF10519_low_4
Description: NF10519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10519_low_4
NF10519_low_4
[»] chr7 (2 HSPs)
chr7 (1-279)||(45141574-45141852)
chr7 (1-247)||(45152217-45152465)
[»] chr2 (1 HSPs)
chr2 (90-234)||(38256127-38256271)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 45141574 - 45141852
Alignment:
Q  1 ttgaagaaacagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45141574 ttgaagaaacagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactaga 45141673  T
Q  101 atttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45141674 atttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatc 45141773  T
Q  201 cgtggatccataatttgtactgccagtgtagctgcctctgttgctggttatcgtggccatgattatgtttcgtccaaac 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| | |||||||    
T  45141774 cgtggatccataatttgtactgccagtgtagctgcctctgttgctggaaatcgtggccatgattatgttacatccaaac 45141852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 45152217 - 45152465
Alignment:
Q  1 ttgaagaaacagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggta------tgtctagcagcat 94  Q
    |||| ||||| |||||||| ||||||||||||||||||||| ||||||| ||||| ||||| |||||||||| ||||| ||      |||||| ||||||    
T  45152217 ttgaggaaaccgtagcttttgcattggaaaaatatggaaccttagacatcatgttcagcaatgctggaattggaggtgctactgctatgtctatcagcat 45152316  T
Q  95 actagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagaga 194  Q
    ||||     |||| | ||||||||||||||||||||||||||||||||||||||||||    || |||||||||||||||| ||| | |||||||| |||    
T  45152317 actaa----tgatgtaaatgaatttgacaacaccatggccattaatgttcgtggatcagctacaactatcaagcacgctgcgcgtgttatggtggaaaga 45152412  T
Q  195 aaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctgg 247  Q
    ||||| ||||||||||||||||| || || ||||| |||| || |||||||||    
T  45152413 aaaattcgtggatccataatttgcacggctagtgtggctggctttgttgctgg 45152465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 90 - 234
Target Start/End: Original strand, 38256127 - 38256271
Alignment:
Q  90 agcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtgg 189  Q
    ||||||||||||||| | || |||||||||||||||||||||||  | ||  |||||||  ||   ||| |||||||||| ||| ||||| | |||||||    
T  38256127 agcatactagaatttaacctaaatgaatttgacaacaccatggctgtgaacattcgtggtgcagctgcaactatcaagcatgcttcacgtgtaatggtgg 38256226  T
Q  190 agagaaaaatccgtggatccataatttgtactgccagtgtagctg 234  Q
    | |||||||| || ||||| |||||||| || |||||||||||||    
T  38256227 aaagaaaaatacgaggatcaataatttgcacagccagtgtagctg 38256271  T

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