View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10519_low_5 (Length: 267)
Name: NF10519_low_5
Description: NF10519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10519_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 14192508 - 14192266
Alignment:
| Q |
9 |
agcaaaggtttaatgtttgagtaggatcgtcaacacgttctaacttcaccaaatctaccacagcagattccaaaaaagagtaatcatcttttgttaaact |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14192508 |
agcaaaggtttaatgtttgagtaggatcgtcaacacgttctaacttcaccaaatctaccacagcagattccaaaaaagagtaatcatcttttgttaaact |
14192409 |
T |
|
| Q |
109 |
tgttaatgttgtacccgaatcaattatgatgttaccctcattatcaccatttggaactcctccaatttctactcttctatttccaacactaaatgcttcc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14192408 |
tgttaatgttgtacccgaatcaattatgatgttaccctcattatcaccatttggaactcctccaatttctactcttctatttccaacactaaatgcttcc |
14192309 |
T |
|
| Q |
209 |
aatgtcaaatagtaaaaggtttcggggtcttttttcaatatag |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14192308 |
aatgtcaaatagtaaaaggtttcggggtcttttttcaatatag |
14192266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 40718208 - 40718073
Alignment:
| Q |
116 |
gttgtacccgaatcaattatgatgttaccctcattatcaccatttggaactcctccaatttctactcttctatttccaacactaaatgcttccaatgtca |
215 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| | |||||||| | || |||| ||||| |||| | |||||||||||||||||||||||||||| |
|
|
| T |
40718208 |
gttgtacctgaatcaattatgatgttaccctcatcactaccatttgaagatctgccaaattctattcttttgtttccaacactaaatgcttccaatgtca |
40718109 |
T |
|
| Q |
216 |
aatagtaaaaggtttcggggtcttttttcaatatag |
251 |
Q |
| |
|
||||||| || | |||||||||||||| ||||| |
|
|
| T |
40718108 |
aatagtagaaaactgtggggtcttttttcactatag |
40718073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 14183451 - 14183345
Alignment:
| Q |
116 |
gttgtacccgaatcaattatgatgttaccctcattatcaccatttggaactcctccaatttctactcttctatttccaacactaaatgcttccaatgtca |
215 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| | ||||||||| | ||| ||| ||||| |||| | || ||||||||||||||||||||||||| |
|
|
| T |
14183451 |
gttgtacctgaatcaattatgatgttaccttcatgaccaccatttgaagacccttcaaattctattcttttgttaccaacactaaatgcttccaatgtca |
14183352 |
T |
|
| Q |
216 |
aatagta |
222 |
Q |
| |
|
||||||| |
|
|
| T |
14183351 |
aatagta |
14183345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 223
Target Start/End: Complemental strand, 14201404 - 14201294
Alignment:
| Q |
113 |
aatgttgtacccgaatcaattatgatgttaccctcattatcaccatttggaactcctccaatttctactcttctatttccaacactaaatgcttccaatg |
212 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||| |||||| || | |||||||| ||||| | | | ||||| |||||||||||||| |||| |
|
|
| T |
14201404 |
aatgttgtaccagaatcaattaaaatgttaccctcattaccaccatatgtaggtcctccaaattctattaatttgtttcccacactaaatgcttctaatg |
14201305 |
T |
|
| Q |
213 |
tcaaatagtaa |
223 |
Q |
| |
|
|||| |||||| |
|
|
| T |
14201304 |
tcaagtagtaa |
14201294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 34646510 - 34646398
Alignment:
| Q |
113 |
aatgttgtacccgaatcaattatgatgttaccctcattatcacca--tttggaa-ctcctccaatttctactcttctatttccaacactaaatgcttcca |
209 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| ||||||| || ||| ||||||| |||||||||| | ||||||||||||||||||| | |
|
|
| T |
34646510 |
aatgttgtacctgaatcaattatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacactaaatgcttgta |
34646411 |
T |
|
| Q |
210 |
atgtcaaatagta |
222 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
34646410 |
atgtcaaaaagta |
34646398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 34666204 - 34666092
Alignment:
| Q |
113 |
aatgttgtacccgaatcaattatgatgttaccctcattatcacca--tttggaa-ctcctccaatttctactcttctatttccaacactaaatgcttcca |
209 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| ||||||| || ||| ||||||| |||||||||| | ||||||||||||||||||| | |
|
|
| T |
34666204 |
aatgttgtacctgaatcaattatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacactaaatgcttgta |
34666105 |
T |
|
| Q |
210 |
atgtcaaatagta |
222 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
34666104 |
atgtcaaaaagta |
34666092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 19649100 - 19649170
Alignment:
| Q |
175 |
ttctactcttctatttccaacactaaatgcttccaatgtcaaatagtaaaaggtttcggggtcttttttca |
245 |
Q |
| |
|
||||| |||| | |||||||||||||||||||| || ||||||||||| || | || ||||||||||||| |
|
|
| T |
19649100 |
ttctattcttttgtttccaacactaaatgcttctaacgtcaaatagtagaaagcttgagggtcttttttca |
19649170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 34646598 - 34646542
Alignment:
| Q |
25 |
ttgagtaggatcgtcaacacgttctaacttcaccaaatctaccacagcagattccaa |
81 |
Q |
| |
|
|||| ||||||| |||||||| |||| ||||||||||| |||||||| |||||||| |
|
|
| T |
34646598 |
ttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaa |
34646542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 34666292 - 34666236
Alignment:
| Q |
25 |
ttgagtaggatcgtcaacacgttctaacttcaccaaatctaccacagcagattccaa |
81 |
Q |
| |
|
|||| ||||||| |||||||| |||| ||||||||||| |||||||| |||||||| |
|
|
| T |
34666292 |
ttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaa |
34666236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 45645706 - 45645602
Alignment:
| Q |
113 |
aatgttgtacccgaatcaattatgatgttaccctcattatcaccatttggaactcctccaatttctactcttctatttccaacactaaatgcttccaatg |
212 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| |||| | || | | || | ||||||| |||||||||| | |||||||||||||||||||| |||| |
|
|
| T |
45645706 |
aatgttgtacctgaatcaattataatgttaccttcatcaccatcctctgaagaccctccaaattctactcttttgtttccaacactaaatgcttctaatg |
45645607 |
T |
|
| Q |
213 |
tcaaa |
217 |
Q |
| |
|
||||| |
|
|
| T |
45645606 |
tcaaa |
45645602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University