View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10519_low_8 (Length: 250)

Name: NF10519_low_8
Description: NF10519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10519_low_8
NF10519_low_8
[»] chr5 (12 HSPs)
chr5 (50-245)||(30058739-30058933)
chr5 (58-245)||(30481782-30481968)
chr5 (58-245)||(29870636-29870822)
chr5 (121-245)||(30678709-30678833)
chr5 (81-245)||(30714553-30714716)
chr5 (166-245)||(30434380-30434458)
chr5 (138-245)||(29851832-29851938)
chr5 (58-141)||(29851725-29851808)
chr5 (166-241)||(30243845-30243919)
chr5 (164-245)||(30340006-30340086)
chr5 (164-245)||(30748199-30748279)
chr5 (70-139)||(30678848-30678917)
[»] chr4 (1 HSPs)
chr4 (58-186)||(20298255-20298383)
[»] chr7 (1 HSPs)
chr7 (138-241)||(26705791-26705893)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 50 - 245
Target Start/End: Original strand, 30058739 - 30058933
Alignment:
Q  50 ttaggtagaatatctttcatgtactctggatctcttcctgcggaatgggttccaaagaagtcaacaacgagaataaaaataaagatttttgagcagttga 149  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||    
T  30058739 ttaggtagaatatctttcatgtactctggatctcttcctgcagaatgggttccaaagatgtcgacaatgagaataaaaataaagatttttgagcagttga 30058838  T
Q  150 aatccaaacataagaaggggaaattgagatcctaccagtaaaatagttttttgcgatggtaattgaggcagataaagggtaaacgtctctgcttct 245  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | |||||||||| ||||||||||||||||||||||    
T  30058839 aatccaaacataagaaggggaaattgagatcctaccagtaaaattgatttttgcgatggttaatgaggcagat-aagggtaaacgtctctgcttct 30058933  T

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Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 30481782 - 30481968
Alignment:
Q  58 aatatctttcatgtactctggatctcttcctgcggaatgggttccaaagaagtcaacaacgagaataaaaataaagatttttgagcagttgaaatccaaa 157  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30481782 aatatctttcatgtagtctggatctcttcctgcggaatgggttccaaataagtcaacaacgagaataaaaataaagatttttgagcagttgaaatccaaa 30481881  T
Q  158 cataagaaggggaaattgagatcctaccagtaaaatagttttttgcgatggtaattgaggcagataaagggtaaacgtctctgcttct 245  Q
    ||||||||||||||||||||||| |||||||||||| | ||||||||||| | |||| ||||||| ||||||||||||||||||||||    
T  30481882 cataagaaggggaaattgagatcttaccagtaaaattgatttttgcgatgttgattgtggcagat-aagggtaaacgtctctgcttct 30481968  T

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Target: chr5; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 29870636 - 29870822
Alignment:
Q  58 aatatctttcatgtactctggatctcttcctgcggaatgggttccaaagaagtcaacaacgagaataaaaataaagatttttgagcagttgaaatccaaa 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  29870636 aatatctttcatgtactctggatctcttcctgcggaatgggttccaaagatgtcgacaatgagaataaaaataaagatttttgagcagttgaaatccaaa 29870735  T
Q  158 cataagaaggggaaattgagatcctaccagtaaaatagttttttgcgatggtaattgaggcagataaagggtaaacgtctctgcttct 245  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||||| | |||| ||||||| ||||||||||||||||||||||    
T  29870736 cataagaaggggaaattgagatcctacaagtaaaattgatttttgcgatgttgattgtggcagat-aagggtaaacgtctctgcttct 29870822  T

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Target: chr5; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 30678833 - 30678709
Alignment:
Q  121 aataaaaataaagatttttgagcagttgaaatccaaacataagaaggggaaattgagatcctaccagtaaaatagttttttgcgatggtaattgaggcag 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||| ||||||    
T  30678833 aataaaaataaagatttttgagcagttgaaatccaaacataagaaggggaaattgagatcctaccagtaaaatatatttttgcgatggtgattaaggcag 30678734  T
Q  221 ataaagggtaaacgtctctgcttct 245  Q
    |||||||||||||||||||||||||    
T  30678733 ataaagggtaaacgtctctgcttct 30678709  T

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Target: chr5; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 81 - 245
Target Start/End: Complemental strand, 30714716 - 30714553
Alignment:
Q  81 ctcttcctgcggaatgggttccaaagaagtcaacaacgagaataaaaataaagatttttgagcagttgaaatccaaacataagaaggggaaattgagatc 180  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||    
T  30714716 ctctttctgcgggatgcgttccaaagaagtcaacaacgagaataaaaataaagatttttgagcagttgaaatgcaaacataagaagggtaaatagagatc 30714617  T
Q  181 ctaccagtaaaatagttttttgcgatggtaattgaggcagataaagggtaaacgtctctgcttct 245  Q
    ||||||||||||| | |||||| |||||  | |||||||||| ||||||||||||||||||||||    
T  30714616 ctaccagtaaaattgatttttgtgatggctaatgaggcagat-aagggtaaacgtctctgcttct 30714553  T

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Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 30434380 - 30434458
Alignment:
Q  166 ggggaaattgagatcctaccagtaaaatagttttttgcgatggtaattgaggcagataaagggtaaacgtctctgcttct 245  Q
    |||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  30434380 ggggaaatagagatcctaccagtaaaatagatttttgcgatggtgattgaggcagat-aagggtaaacgtctctgcttct 30434458  T

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Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 29851832 - 29851938
Alignment:
Q  138 ttgagcagttgaaatccaaacataagaaggggaaattgagatcctaccagtaaaatagttttttgcgatggtaattgagg-cagataaagggtaaacgtc 236  Q
    |||||||||||||||||||| |||||||||  |||| |||| |||||||||||||||| | ||||||||||| ||||||| ||||| ||||||||| |||    
T  29851832 ttgagcagttgaaatccaaatataagaagga-aaatagagagcctaccagtaaaatagatctttgcgatggtgattgaggccagat-aagggtaaatgtc 29851929  T
Q  237 tctgcttct 245  Q
    |||||||||    
T  29851930 tctgcttct 29851938  T

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Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 29851725 - 29851808
Alignment:
Q  58 aatatctttcatgtactctggatctcttcctgcggaatgggttccaaagaagtcaacaacgagaataaaaataaagatttttga 141  Q
    |||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||| | | ||||||||||||    
T  29851725 aatatcattcatgtaccctggatctcttcctacggaatgggttacaaagaagtcaacaatgagaatatataaaaagatttttga 29851808  T

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Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 30243919 - 30243845
Alignment:
Q  166 ggggaaattgagatcctaccagtaaaatagttttttgcgatggtaattgaggcagataaagggtaaacgtctctgc 241  Q
    |||||||| ||||||||||||||||||| | ||||||||||||| |||||||||||| ||||||||||||||||||    
T  30243919 ggggaaatagagatcctaccagtaaaattgatttttgcgatggtgattgaggcagat-aagggtaaacgtctctgc 30243845  T

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Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 30340086 - 30340006
Alignment:
Q  164 aaggggaaattgagatcctaccagtaaaatagttttttgcgatggtaattgaggcagataaagggtaaacgtctctgcttct 245  Q
    |||||||||| |||||| |||||||||||| |  |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  30340086 aaggggaaatagagatcttaccagtaaaattgaattttgcgatggtgattgaggcagat-aagggtaaacgtctctgcttct 30340006  T

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Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 30748199 - 30748279
Alignment:
Q  164 aaggggaaattgagatcctaccagtaaaatagttttttgcgatggtaattgaggcagataaagggtaaacgtctctgcttct 245  Q
    |||||||||| |||||| |||||||||||| |  ||||||||| || |||||||||||| ||||||||||||||||||||||    
T  30748199 aaggggaaatagagatcttaccagtaaaattgaattttgcgattgtgattgaggcagat-aagggtaaacgtctctgcttct 30748279  T

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Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 30678917 - 30678848
Alignment:
Q  70 gtactctggatctcttcctgcggaatgggttccaaagaagtcaacaacgagaataaaaataaagattttt 139  Q
    |||||| ||| || || ||| |||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  30678917 gtactcaggaactgtttctgtggaatgggttccaaagaagttaactacgagaataaaaataaagattttt 30678848  T

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Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 58 - 186
Target Start/End: Complemental strand, 20298383 - 20298255
Alignment:
Q  58 aatatctttcatgtactctggatctcttcctgcggaatgggttccaaagaagtcaacaacgagaataaaaataaagatttttgagcagttgaaatccaaa 157  Q
    ||||| |||||||||||||||||||||| || | ||| ||||||||||||||||||||  ||||||||||||||| | ||||||| ||||||||||||||    
T  20298383 aatatatttcatgtactctggatctctttctacagaacgggttccaaagaagtcaacattgagaataaaaataaaaaattttgagtagttgaaatccaaa 20298284  T
Q  158 cataagaaggggaaattgagatcctacca 186  Q
    ||||||||  |||||| ||||||||||||    
T  20298283 cataagaataggaaatagagatcctacca 20298255  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 26705791 - 26705893
Alignment:
Q  138 ttgagcagttgaaatccaaacataagaaggggaaattgagatcctaccagtaaaatagttttttgcgatggtaattgaggcagataaagggtaaacgtct 237  Q
    |||| ||||||||||||||||||||||||||||||  |||||| ||||| |||||||| |||||| |||||| |||||||||||| ||||||||||||||    
T  26705791 ttgaacagttgaaatccaaacataagaaggggaaacagagatcgtaccactaaaatagatttttgtgatggtgattgaggcagat-aagggtaaacgtct 26705889  T
Q  238 ctgc 241  Q
    ||||    
T  26705890 ctgc 26705893  T

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