View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10519_low_9 (Length: 249)

Name: NF10519_low_9
Description: NF10519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10519_low_9
NF10519_low_9
[»] chr6 (2 HSPs)
chr6 (1-142)||(33926396-33926537)
chr6 (147-233)||(2613127-2613214)
[»] chr7 (2 HSPs)
chr7 (140-236)||(25753593-25753689)
chr7 (141-221)||(11570413-11570495)
[»] chr3 (3 HSPs)
chr3 (141-236)||(1730983-1731078)
chr3 (141-236)||(11985106-11985201)
chr3 (145-224)||(12126864-12126943)
[»] scaffold0158 (1 HSPs)
scaffold0158 (141-236)||(11654-11749)
[»] chr2 (3 HSPs)
chr2 (141-236)||(19803796-19803891)
chr2 (140-227)||(19812325-19812412)
chr2 (149-214)||(18031616-18031681)
[»] chr4 (3 HSPs)
chr4 (141-236)||(48087150-48087245)
chr4 (140-234)||(13898028-13898122)
chr4 (140-224)||(18274587-18274671)
[»] chr1 (3 HSPs)
chr1 (141-236)||(27774270-27774365)
chr1 (141-221)||(25606974-25607053)
chr1 (159-224)||(51054956-51055021)
[»] scaffold1752 (1 HSPs)
scaffold1752 (139-236)||(799-896)
[»] chr5 (4 HSPs)
chr5 (140-236)||(40579242-40579338)
chr5 (141-227)||(28361402-28361488)
chr5 (139-221)||(27273043-27273125)
chr5 (147-220)||(26284342-26284415)
[»] chr8 (2 HSPs)
chr8 (140-227)||(21177948-21178035)
chr8 (161-235)||(13281156-13281230)
[»] scaffold0009 (1 HSPs)
scaffold0009 (141-221)||(224748-224828)
[»] scaffold0205 (1 HSPs)
scaffold0205 (139-227)||(3484-3572)
[»] scaffold0026 (1 HSPs)
scaffold0026 (140-236)||(73673-73769)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 33926537 - 33926396
Alignment:
Q  1 atagtcctagctttatctctgctatttgaattcttcttctggtctaggactgtatttgggcatggcttgcacatttctctttgttgggaccattttaaag 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33926537 atagtcttagctttatctctgctatttgaattcttcttctggtctaggactgtatttgggcatggcttgcacatttctctttgttgggaccattttaaag 33926438  T
Q  101 gacactagatgaccagttctggactttttaggtggtccattg 142  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33926437 gacactagatgaccagttctggactttttaggtggtccattg 33926396  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 233
Target Start/End: Complemental strand, 2613214 - 2613127
Alignment:
Q  147 ggccgcaagtgcacggctatgtcggttttagtataaaaa-gtatcgtatccacagagaccaaattaacaagtaccgctttctgttgtt 233  Q
    ||||||||||| ||| ||||||| ||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||||  |||||||    
T  2613214 ggccgcaagtgtacgactatgtcagttttagtataaaaatgtatcctatccacatagaccaatttaacaagtaccgcttcttgttgtt 2613127  T

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Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 25753689 - 25753593
Alignment:
Q  140 ttgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttctgttgtttct 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25753689 ttgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttctgttgtttct 25753593  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 11570413 - 11570495
Alignment:
Q  141 tgacagggccgcaagtgcacggctatgtcggttttagtataaaaag---tatcgtatccacagagaccaaattaacaagtaccg 221  Q
    ||||| |||||||||||||||  ||||||| ||||||| |||||||   | ||||||||||| ||||||| ||||||| |||||    
T  11570413 tgacacggccgcaagtgcacgagtatgtcg-ttttagtgtaaaaagggatttcgtatccacaaagaccaatttaacaattaccg 11570495  T

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Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 141 - 236
Target Start/End: Original strand, 1730983 - 1731078
Alignment:
Q  141 tgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttctgttgtttct 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1730983 tgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttctgttgtttct 1731078  T

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Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 11985201 - 11985106
Alignment:
Q  141 tgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttctgttgtttct 236  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11985201 tgacagggccgcaagtgcatggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttatgttgtttct 11985106  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 12126943 - 12126864
Alignment:
Q  145 agggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctt 224  Q
    ||||||||| ||| ||| ||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12126943 agggccgcatgtgtacgactatgttagttttagtataaaaagtatcgtatccacagagaccaatttaacaagtaccgctt 12126864  T

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Target: scaffold0158 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 11749 - 11654
Alignment:
Q  141 tgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttctgttgtttct 236  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11749 tgacagggccgcaagtgcacggctatgtcgattttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttctgttgtttct 11654  T

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Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 141 - 236
Target Start/End: Original strand, 19803796 - 19803891
Alignment:
Q  141 tgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttctgttgtttct 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19803796 tgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttctattgtttct 19803891  T

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Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 19812325 - 19812412
Alignment:
Q  140 ttgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttct 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19812325 ttgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttct 19812412  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 18031616 - 18031681
Alignment:
Q  149 ccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaaca 214  Q
    ||||||||| ||  ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||    
T  18031616 ccgcaagtgtacaactatgtcggttttagtataaaaagtattgtatccacaaagaccaatttaaca 18031681  T

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Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 48087245 - 48087150
Alignment:
Q  141 tgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttctgttgtttct 236  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48087245 tgacacggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgttttctgttgtttct 48087150  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 13898028 - 13898122
Alignment:
Q  140 ttgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttctgttgttt 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  13898028 ttgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccatagagaccaaattaacaagtaccgctttatgttgttt 13898122  T

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Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 18274671 - 18274587
Alignment:
Q  140 ttgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctt 224  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  18274671 ttgacagggctgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccatagagaccaatttatcaagtaccgctt 18274587  T

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Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 141 - 236
Target Start/End: Original strand, 27774270 - 27774365
Alignment:
Q  141 tgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttctgttgtttct 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  27774270 tgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttctattatttct 27774365  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 25606974 - 25607053
Alignment:
Q  141 tgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccg 221  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| |||||    
T  25606974 tgacagggctgcaagtgtacggctatgtcggttttagtataaaaagtatcgtatccaca-agaccaattttacaactaccg 25607053  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 51054956 - 51055021
Alignment:
Q  159 acggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctt 224  Q
    |||||||||| |||||||||||||||| ||||| ||||||||||| ||| ||||||||||| ||||    
T  51054956 acggctatgttggttttagtataaaaaatatcgcatccacagagatcaatttaacaagtactgctt 51055021  T

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Target: scaffold1752 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold1752
Description:

Target: scaffold1752; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 799 - 896
Alignment:
Q  139 attgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttctgttgtttct 236  Q
    |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  799 attgacagggccgcaaatgaacgtctatgtcggttttagtataaaaagtatcgtatctacagagaccaaattaacaagtaccgctttctgttgtttct 896  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 40579338 - 40579242
Alignment:
Q  140 ttgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttctgttgtttct 236  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||    
T  40579338 ttgacagggccgcaagtgcacggctatgtcagttttagtataaaaagtatcgtatctacagagaccaaactaagaagtaccgctttctgttgtttct 40579242  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 28361488 - 28361402
Alignment:
Q  141 tgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttct 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  28361488 tgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatcctcagagaccaatttaacaagtaccgctttct 28361402  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 27273125 - 27273043
Alignment:
Q  139 attgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccg 221  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| ||||||| |||||    
T  27273125 attgacagggccgcaagtgcacgactatgtcggttttagtataaaaggtatcgtatccacagaggccaatttaacaactaccg 27273043  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 26284342 - 26284415
Alignment:
Q  147 ggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtacc 220  Q
    ||||||||||  ||| ||||| ||||||||||||||||| ||| ||||||||| ||||||| ||||||| ||||    
T  26284342 ggccgcaagtatacgactatgacggttttagtataaaaaatattgtatccacatagaccaatttaacaaatacc 26284415  T

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Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 21177948 - 21178035
Alignment:
Q  140 ttgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttct 227  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||    
T  21177948 ttgacagggccgcaagtgcacgactatgtcggttttagtataaaaagtattgtatcctcagagaccaatttaacaagtaccgctttct 21178035  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 13281230 - 13281156
Alignment:
Q  161 ggctatgtcggttttagtataaaaag-tatcgtatccacagagaccaaattaacaagtaccgctttctgttgtttc 235  Q
    |||||| ||||||||||||||||| | ||||| ||||| |||||||||||| |||||||||||| ||||| |||||    
T  13281230 ggctatatcggttttagtataaaaggttatcgaatccagagagaccaaatt-acaagtaccgctatctgtcgtttc 13281156  T

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Target: scaffold0009 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 224748 - 224828
Alignment:
Q  141 tgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccg 221  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  224748 tgacagggccgcaagtgtacggctgtgtcggttttagtataaaaagtatcgtatccacagagaccaatttaacaagtaccg 224828  T

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Target: scaffold0205 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 3572 - 3484
Alignment:
Q  139 attgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttct 227  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||||||||| |||||| |||||||||| |||||||||| ||||||||    
T  3572 attgacaggaccgcaagtgcactactatgtcggttttagtataaaaagtattgtatcctcagagaccaatttaacaagtatcgctttct 3484  T

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Target: scaffold0026 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 73769 - 73673
Alignment:
Q  140 ttgacagggccgcaagtgcacggctatgtcggttttagtataaaaagtatcgtatccacagagaccaaattaacaagtaccgctttctgttgtttct 236  Q
    ||||||| |||||||||| |||  ||||| |||||||||||||||||||| || |||||||||||||| |||||||||| |||||  ||||||||||    
T  73769 ttgacagagccgcaagtgtacgattatgttggttttagtataaaaagtatagtctccacagagaccaatttaacaagtatcgcttcttgttgtttct 73673  T

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