View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1051_high_4 (Length: 262)
Name: NF1051_high_4
Description: NF1051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1051_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 12950292 - 12950515
Alignment:
| Q |
21 |
aaatagaatgaaaattgtttttcccacatcaaaaattgctcaagcacacctgaaaattaaatatataacccaacgatacctaattgccagttggcctttg |
120 |
Q |
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| T |
12950292 |
aaatagaatgaaaattgtttttcccacttcaaaaattgctcaagcacacctgaaaattaaatatataacccaacgatacctaattgccatttggcctttg |
12950391 |
T |
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| Q |
121 |
caacggtcgttaatttccatttgcttaaaccaacgatggttaactaccgtattttccttgcaacggtacttaacaaccgttgcgtaggaaactcaccaaa |
220 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12950392 |
caacggtcgttaatttccattcgcttaaaccaacgatggttaactaccgtattttccttgcaacggtacttaacaaccgttgcgtaggaaacttaccaaa |
12950491 |
T |
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| Q |
221 |
atcagcacaacctactcctacctc |
244 |
Q |
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| T |
12950492 |
accagcacaacctactcctacctc |
12950515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 12901218 - 12901441
Alignment:
| Q |
21 |
aaatagaatgaaaattgtttttcccacatcaaaaattgctcaagcacacctgaaaattaaatatataacccaacgatacctaattgccagttggcctttg |
120 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||| | || ||||| |
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| T |
12901218 |
aaatagaatgaaaattgtttttcccacttcaaaaattgctcaaacacacctgaaaattaaatatgtaatccaacgatagataattgcggttcggtctttg |
12901317 |
T |
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| Q |
121 |
caacggtcgttaatttccatttgcttaaaccaacgatggttaactaccgtattttccttgcaacggtacttaacaaccgttgcgtaggaaactcaccaaa |
220 |
Q |
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| T |
12901318 |
caacagttgttagttgccattcacttaaagcaacgatggttaactaccgtattttccttgcaatggtacttaacaaccgttgcgctggaaacttaccaaa |
12901417 |
T |
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| Q |
221 |
atcagcacaacctactcctacctc |
244 |
Q |
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| T |
12901418 |
accagcacaacctactcctacctc |
12901441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 31392233 - 31392314
Alignment:
| Q |
163 |
actaccgtattttccttgcaacggtacttaacaaccgttgcgtaggaaactcaccaaaatcagcacaacctactcctacctc |
244 |
Q |
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||||||||||||||| | |||||||||| ||||||| ||||| ||||||| |||| | || ||||||||||||||||||| |
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| T |
31392233 |
actaccgtattttccctacaacggtactcaacaaccattgcgctggaaacttcccaagaccaacacaacctactcctacctc |
31392314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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