View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1051_low_1 (Length: 664)

Name: NF1051_low_1
Description: NF1051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1051_low_1
NF1051_low_1
[»] chr1 (21 HSPs)
chr1 (10-361)||(50444995-50445343)
chr1 (385-634)||(50444747-50444996)
chr1 (83-345)||(48395725-48395982)
chr1 (567-641)||(46111530-46111604)
chr1 (567-631)||(52627515-52627579)
chr1 (564-634)||(35943496-35943566)
chr1 (567-641)||(45585051-45585125)
chr1 (567-634)||(14470856-14470923)
chr1 (567-634)||(15072839-15072906)
chr1 (567-641)||(27814292-27814366)
chr1 (567-641)||(34351998-34352072)
chr1 (582-641)||(52628915-52628974)
chr1 (567-634)||(14477840-14477907)
chr1 (581-632)||(51042393-51042444)
chr1 (567-632)||(24499706-24499771)
chr1 (567-634)||(15071342-15071409)
chr1 (353-396)||(42841677-42841720)
chr1 (571-634)||(50442628-50442691)
chr1 (593-634)||(44278398-44278439)
chr1 (567-631)||(16123287-16123351)
chr1 (567-631)||(33369247-33369311)
[»] scaffold0031 (2 HSPs)
scaffold0031 (567-641)||(125275-125349)
scaffold0031 (567-634)||(123969-124036)
[»] chr4 (33 HSPs)
chr4 (567-641)||(37882834-37882908)
chr4 (569-641)||(6349595-6349667)
chr4 (567-634)||(1831312-1831379)
chr4 (567-641)||(1587182-1587256)
chr4 (567-641)||(6348155-6348229)
chr4 (567-641)||(24426339-24426413)
chr4 (568-634)||(27850981-27851047)
chr4 (567-641)||(37884319-37884393)
chr4 (567-631)||(393690-393754)
chr4 (567-634)||(1829753-1829820)
chr4 (561-634)||(390211-390284)
chr4 (553-634)||(52239863-52239944)
chr4 (567-631)||(1794411-1794475)
chr4 (567-631)||(4128993-4129057)
chr4 (566-634)||(42810252-42810320)
chr4 (567-634)||(1188843-1188910)
chr4 (567-634)||(2312531-2312598)
chr4 (567-630)||(44503731-44503794)
chr4 (581-631)||(1588141-1588191)
chr4 (557-634)||(1190241-1190318)
chr4 (567-631)||(53205535-53205599)
chr4 (567-634)||(2310923-2310990)
chr4 (567-634)||(42871095-42871162)
chr4 (567-634)||(44501518-44501585)
chr4 (567-632)||(11968511-11968576)
chr4 (565-631)||(27847676-27847742)
chr4 (567-632)||(40792751-40792816)
chr4 (567-634)||(4871413-4871480)
chr4 (568-631)||(42872351-42872414)
chr4 (567-634)||(49344059-49344126)
chr4 (593-631)||(33231415-33231453)
chr4 (554-610)||(15450148-15450204)
chr4 (590-630)||(52963592-52963632)
[»] chr2 (24 HSPs)
chr2 (567-632)||(11317419-11317484)
chr2 (567-641)||(28562851-28562925)
chr2 (568-641)||(43034513-43034586)
chr2 (567-634)||(32469148-32469215)
chr2 (568-633)||(42641910-42641975)
chr2 (567-641)||(43033082-43033156)
chr2 (565-634)||(28561366-28561435)
chr2 (567-634)||(7437810-7437877)
chr2 (567-634)||(11315933-11316000)
chr2 (569-631)||(7436469-7436531)
chr2 (567-634)||(17459253-17459320)
chr2 (558-632)||(11547650-11547724)
chr2 (567-627)||(6030526-6030586)
chr2 (567-634)||(17460733-17460800)
chr2 (567-634)||(32470624-32470691)
chr2 (583-631)||(12359731-12359779)
chr2 (581-632)||(2277520-2277571)
chr2 (593-631)||(6030631-6030669)
chr2 (593-631)||(29220928-29220966)
chr2 (593-631)||(29334227-29334265)
chr2 (581-631)||(37956963-37957013)
chr2 (432-486)||(41099465-41099519)
chr2 (593-631)||(44191162-44191200)
chr2 (579-619)||(23233760-23233800)
[»] chr8 (32 HSPs)
chr8 (567-641)||(32798574-32798648)
chr8 (567-634)||(44076412-44076479)
chr8 (567-634)||(32695324-32695391)
chr8 (567-640)||(41630167-41630240)
chr8 (567-632)||(26696532-26696597)
chr8 (567-631)||(45281240-45281304)
chr8 (567-634)||(4810469-4810536)
chr8 (567-634)||(32797138-32797205)
chr8 (567-612)||(12850466-12850511)
chr8 (582-634)||(22551022-22551074)
chr8 (562-634)||(42870808-42870880)
chr8 (567-634)||(30786676-30786743)
chr8 (567-632)||(212763-212828)
chr8 (567-632)||(239426-239491)
chr8 (567-632)||(726386-726451)
chr8 (567-632)||(792781-792846)
chr8 (567-632)||(798887-798952)
chr8 (567-632)||(32693830-32693895)
chr8 (590-634)||(45279703-45279747)
chr8 (567-634)||(8570118-8570185)
chr8 (581-632)||(28418820-28418871)
chr8 (581-632)||(28420225-28420276)
chr8 (567-634)||(42872238-42872305)
chr8 (590-632)||(6397806-6397848)
chr8 (584-632)||(211612-211660)
chr8 (584-632)||(240596-240644)
chr8 (584-632)||(725235-725283)
chr8 (584-632)||(793951-793999)
chr8 (567-631)||(13197993-13198057)
chr8 (567-631)||(30787652-30787716)
chr8 (568-634)||(41629709-41629775)
chr8 (567-632)||(17702326-17702391)
[»] chr7 (26 HSPs)
chr7 (567-634)||(47456424-47456491)
chr7 (559-634)||(40509783-40509858)
chr7 (567-641)||(32256437-32256511)
chr7 (567-641)||(33096869-33096943)
chr7 (559-634)||(22115213-22115289)
chr7 (567-634)||(30310121-30310188)
chr7 (567-634)||(40508378-40508445)
chr7 (567-634)||(45455421-45455488)
chr7 (567-634)||(47454337-47454404)
chr7 (568-634)||(43460872-43460938)
chr7 (567-634)||(6173499-6173566)
chr7 (568-631)||(46835676-46835739)
chr7 (567-621)||(40811340-40811394)
chr7 (567-632)||(30311520-30311585)
chr7 (581-634)||(32255003-32255056)
chr7 (574-634)||(30333292-30333352)
chr7 (593-641)||(30334679-30334727)
chr7 (567-634)||(4300097-4300164)
chr7 (567-634)||(32602933-32603000)
chr7 (567-634)||(43459455-43459522)
chr7 (591-634)||(11344531-11344574)
chr7 (567-632)||(33779135-33779200)
chr7 (567-631)||(4298713-4298777)
chr7 (567-631)||(47059108-47059172)
chr7 (581-631)||(41078770-41078820)
chr7 (567-632)||(45454038-45454103)
[»] chr5 (17 HSPs)
chr5 (567-641)||(325227-325301)
chr5 (567-634)||(30859221-30859288)
chr5 (565-634)||(27705365-27705434)
chr5 (567-634)||(22047732-22047799)
chr5 (567-634)||(39603853-39603920)
chr5 (568-632)||(39605520-39605584)
chr5 (567-634)||(30857800-30857867)
chr5 (567-626)||(41798004-41798063)
chr5 (590-632)||(11262279-11262321)
chr5 (590-634)||(22049185-22049229)
chr5 (593-632)||(9169612-9169651)
chr5 (581-632)||(32757839-32757890)
chr5 (562-631)||(15548235-15548302)
chr5 (593-631)||(20538079-20538117)
chr5 (579-641)||(24509078-24509140)
chr5 (568-617)||(324068-324117)
chr5 (581-641)||(24503198-24503258)
[»] chr3 (29 HSPs)
chr3 (567-641)||(18197147-18197221)
chr3 (567-641)||(38242558-38242632)
chr3 (567-632)||(3209982-3210047)
chr3 (567-634)||(53624410-53624477)
chr3 (567-632)||(12108034-12108099)
chr3 (567-634)||(34818086-34818153)
chr3 (567-634)||(38240906-38240973)
chr3 (567-634)||(40244187-40244254)
chr3 (567-630)||(12105290-12105353)
chr3 (567-634)||(34819333-34819400)
chr3 (568-640)||(23443500-23443572)
chr3 (565-632)||(18442250-18442317)
chr3 (565-632)||(19487324-19487391)
chr3 (567-634)||(37735306-37735373)
chr3 (567-634)||(37736130-37736197)
chr3 (581-632)||(50809435-50809486)
chr3 (581-632)||(50810885-50810936)
chr3 (581-632)||(50864928-50864979)
chr3 (581-632)||(50866376-50866427)
chr3 (567-634)||(53194919-53194986)
chr3 (590-632)||(8796364-8796406)
chr3 (568-632)||(18458708-18458772)
chr3 (567-631)||(36176559-36176623)
chr3 (567-634)||(53421810-53421877)
chr3 (568-634)||(41544663-41544729)
chr3 (593-634)||(53420342-53420383)
chr3 (575-619)||(10301882-10301926)
chr3 (567-631)||(40364319-40364383)
chr3 (567-631)||(53187559-53187623)
[»] scaffold0034 (1 HSPs)
scaffold0034 (567-634)||(109794-109861)
[»] chr6 (15 HSPs)
chr6 (567-641)||(34023886-34023960)
chr6 (567-631)||(15730082-15730146)
chr6 (587-631)||(34024116-34024160)
chr6 (567-634)||(6452560-6452627)
chr6 (567-630)||(7311777-7311840)
chr6 (581-632)||(232190-232241)
chr6 (565-631)||(27082196-27082263)
chr6 (565-628)||(27967104-27967167)
chr6 (567-634)||(7310276-7310343)
chr6 (568-631)||(27080925-27080988)
chr6 (581-631)||(233616-233666)
chr6 (593-631)||(2687976-2688014)
chr6 (593-631)||(6701406-6701444)
chr6 (593-631)||(6702922-6702960)
chr6 (593-631)||(18346802-18346840)
[»] scaffold0077 (2 HSPs)
scaffold0077 (567-634)||(54234-54301)
scaffold0077 (571-631)||(52596-52656)
[»] scaffold0118 (1 HSPs)
scaffold0118 (574-634)||(43624-43684)
[»] scaffold1152 (1 HSPs)
scaffold1152 (581-641)||(2518-2577)
[»] scaffold1251 (1 HSPs)
scaffold1251 (581-632)||(1136-1187)
[»] scaffold0201 (1 HSPs)
scaffold0201 (567-641)||(21127-21201)


Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 10 - 361
Target Start/End: Complemental strand, 50445343 - 50444995
Alignment:
Q  10 aataatatgaatgactagatagaaaaagaacacagcgatgatgttatacttgcatgaagaatgcattaggttgggcatgcaattaaaacagtcttcttca 109  Q
    ||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50445343 aataagatgaatggctagatagaaaaagaacacagcgatgatattatacttgcatgaagaacgcattaggttgggcatgcaattaaaacagtcttcttca 50445244  T
Q  110 aaactggtaagggaagaactaaaatcatgattaagtgtggtgtgtatatgcatgaactcccccatcaagcttgattttcggaaatgccaagattttattg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||    
T  50445243 aaactggtaagggaagaactaaaatcatgattaagtgtggtgtgtatatgcatgaactcccccatcaagctcaattttcggaaacgccaagattttattg 50445144  T
Q  210 tcaaaacttggcatgccaaacctctttgtgatatatctttggtgattaaagccaaaattagtcatgaaaataggatcagttgcaagaaaaacataatgca 309  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  50445143 tcaaaacttggcatgccaaacctc--tgtgatatatctttggtgattaaagccaaaattattcatgaaaataggatcagttgcaagaaaaacataatgca 50445046  T
Q  310 ccaaaaagtaaagtcactgaggcaagttctctcaatcagcagcaagcaggaa 361  Q
    |||||||||||||||||||||||| ||| ||||||||||||| |||||||||    
T  50445045 ccaaaaagtaaagtcactgaggcacgtt-tctcaatcagcagtaagcaggaa 50444995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 385 - 634
Target Start/End: Complemental strand, 50444996 - 50444747
Alignment:
Q  385 aattgcagtttgatacccaactgcagttagctgtcgttggggttatgatgtgtaatttccaggtgtgtcatagcaatttttgatgtgggaagaacaattt 484  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  50444996 aattgcagtttactacccaactgcagttagctgtcgttggggttatgatgtgtaatttccaggtgtgtcataacaatttttgaagtgggaagaacaattt 50444897  T
Q  485 tctgttgaagttgatatttaaggacattttgctataatttcaaccacatagacaagctcacaagcacataataaataaatgacttatttgattcaatggt 584  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  50444896 tctgttgaagttgatatttaaggacattttgctataatttcaacaacatagacaagctcacaagcacataataaataaatggcttatttgattcaatggt 50444797  T
Q  585 ccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50444796 ccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 50444747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 83 - 345
Target Start/End: Complemental strand, 48395982 - 48395725
Alignment:
Q  83 ggcatgcaattaaaacagtcttcttcaaaactggtaagggaagaactaaaatcatgattaagtgtggtgtgtatatgcatgaactcccccatcaagcttg 182  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||| |||||| |||||||||||   || || || ||||||||||||||||||||      
T  48395982 ggcatgcaattaaaacagtcttcttcgaaactggtaaggtaagaactgaaatcaagattaagtgtg---tgcatgtggatgaactcccccatcaagctca 48395886  T
Q  183 attttcggaaatgccaagattttattgtcaaaacttggcatgccaaacctctttgtgatatatctttggtgatt-aaagccaaaattagtcatgaaaata 281  Q
    |||| || |||||||||||  ||||||||| ||||||||||||||||||||||||||| |||||| |||||||| ||| ||||||||||||||||||||     
T  48395885 atttccgaaaatgccaagaccttattgtcagaacttggcatgccaaacctctttgtgagatatctctggtgattaaaacccaaaattagtcatgaaaat- 48395787  T
Q  282 ggatcagttgcaagaaaaacataatgcaccaaaaagtaaagtcactgaggcaagttctctcaat 345  Q
       |||||||||||||||||||||| | ||| ||||| ||| || ||||||| |||||| ||||    
T  48395786 --ttcagttgcaagaaaaacataatactccagaaagtgaagccattgaggcatgttctcccaat 48395725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 567 - 641
Target Start/End: Complemental strand, 46111604 - 46111530
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||||||||||||||||||| |||||||||||| |||| ||||| ||||||||||||||||||||| ||||||    
T  46111604 cttatttgattcaatggtcccttaaataatttcaagtttttattttggtcccacaattaataaaacgtacctttt 46111530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 567 - 631
Target Start/End: Original strand, 52627515 - 52627579
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  52627515 cttatttgatccaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaa 52627579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 564 - 634
Target Start/End: Complemental strand, 35943566 - 35943496
Alignment:
Q  564 tgacttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||||||| ||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||    
T  35943566 tgacttatttgatttaatggtctcttaaataatttcaaatttttattttggtcccacaattaataaaacgt 35943496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 567 - 641
Target Start/End: Complemental strand, 45585125 - 45585051
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||||||| |||| ||||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||    
T  45585125 cttatttgatccaatagtccctcaaataatttcaagttttcattttggtctcacaattaataaaacgtacctttt 45585051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 14470856 - 14470923
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| ||||||||||  |||||||||||| |||||||||| |||||||||||||||||||||    
T  14470856 cttatttgatccaatggtcccctaaataatttcaagttttcattttggtcccacaattaataaaacgt 14470923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 15072906 - 15072839
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||||||||||||||||   || ||||||||| |||||||||| |||||||||||||||||||||    
T  15072906 cttatttgattcaatggtcctctaattaatttcaagttttcattttggtcccacaattaataaaacgt 15072839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 567 - 641
Target Start/End: Original strand, 27814292 - 27814366
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||||| | ||||  |||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||||    
T  27814292 cttatttgttccaatcatccctcaaataatttcaagttttcattttagtcctataattaataaaacgtacctttt 27814366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 567 - 641
Target Start/End: Complemental strand, 34352072 - 34351998
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||||||| |||| |||||| ||||||||| || |||||||||| |||||||||||||||||| || ||||||    
T  34352072 cttatttgatccaatagtcccttaaataattttaagttttcattttggtcccacaattaataaaatgtacctttt 34351998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 582 - 641
Target Start/End: Complemental strand, 52628974 - 52628915
Alignment:
Q  582 ggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    ||||||| |||||||||||| |||| ||||| ||||||||||||||||||||| ||||||    
T  52628974 ggtcccttaaataatttcaagttttaattttggtcccacaattaataaaacgtacctttt 52628915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 14477907 - 14477840
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| ||||||||||  ||||||||| || |||||| |||  ||||||||||||||||||||    
T  14477907 cttatttgatccaatggtcccataaataattttaagttttcactttgatcccacaattaataaaacgt 14477840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 581 - 632
Target Start/End: Complemental strand, 51042444 - 51042393
Alignment:
Q  581 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||| || ||||||| |||||||||||| |||||||||||||||||||    
T  51042444 tggtcccttaattaatttccaattttcattttggtcccacaattaataaaac 51042393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 632
Target Start/End: Complemental strand, 24499771 - 24499706
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||||||   |||||||  |||||||||||| |||||||||| ||| |||||||||||||||    
T  24499771 cttatttgatttgttggtcccctaaataatttcaagttttcattttggtctcacaattaataaaac 24499706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 15071342 - 15071409
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||| || || |||||||  |||||||||||| |||||||||| ||| || ||||||||||||||    
T  15071342 cttatttaatccattggtcccctaaataatttcaagttttcattttggtcacataattaataaaacgt 15071409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 396
Target Start/End: Complemental strand, 42841720 - 42841677
Alignment:
Q  353 aagcaggaactacacttaagtgcagcttagccaattgcagtttg 396  Q
    ||||||||||| ||||||||||||||| || |||||||||||||    
T  42841720 aagcaggaactgcacttaagtgcagctgagtcaattgcagtttg 42841677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 634
Target Start/End: Original strand, 50442628 - 50442691
Alignment:
Q  571 tttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||| |||| |||||||||||||||| |  |||| ||||| ||| |||||||||||||||||    
T  50442628 tttgatccaattgtccctcaaataattttatgtttttattttggtctcacaattaataaaacgt 50442691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 593 - 634
Target Start/End: Complemental strand, 44278439 - 44278398
Alignment:
Q  593 taatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||||| |||||||||| ||||||| |||||||||||||    
T  44278439 taatttcaagttttcattttggtcccacgattaataaaacgt 44278398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 631
Target Start/End: Original strand, 16123287 - 16123351
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    ||||||||||||| || |||   ||||||||| || |||||||||| || |||||||||||||||    
T  16123287 cttatttgattcattgatcctctaaataatttaaagttttcattttggttccacaattaataaaa 16123351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 631
Target Start/End: Complemental strand, 33369311 - 33369247
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||||| |||||||| |  || ||||||||| | |||||||| |||||| |||||||||||    
T  33369311 cttatttgatccaatggtctcctaattaatttcaagtattcattttggtcccataattaataaaa 33369247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 567 - 641
Target Start/End: Complemental strand, 125349 - 125275
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  125349 cttatttgatccaatggtccctcaaataatttcaaattttcattttggtcccacaattaataaaacgtacctttt 125275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 123969 - 124036
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||    
T  123969 cttatttgatccaatggtccttcaaataatttcaagttttcattttggtcccacaattaataaaacgt 124036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 567 - 641
Target Start/End: Original strand, 37882834 - 37882908
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  37882834 cttatttgatttaatggtccctcaaataatttcaagttttcattttagtcccacaattaataaaacgtacctttt 37882908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 569 - 641
Target Start/End: Complemental strand, 6349667 - 6349595
Alignment:
Q  569 tatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  6349667 tatttgattcaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgtacctttt 6349595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 1831379 - 1831312
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  1831379 cttatttgatccaatggtccctcaattaatttcaagttttcattttagtcccacaattaataaaacgt 1831312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 567 - 641
Target Start/End: Original strand, 1587182 - 1587256
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  1587182 cttatttgatccaacggtccctcaaataattttaaattttcattttagtctcacaattaataaaacgtacctttt 1587256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 567 - 641
Target Start/End: Original strand, 6348155 - 6348229
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    ||||||||||  ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  6348155 cttatttgatcaaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgtacctttt 6348229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 567 - 641
Target Start/End: Original strand, 24426339 - 24426413
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||    
T  24426339 cttatttgatccaatggtccctcaaataatttcaagttttcattttggtctcacaattaataaaacgtacctttt 24426413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 568 - 634
Target Start/End: Complemental strand, 27851047 - 27850981
Alignment:
Q  568 ttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  27851047 ttatttgatccaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgt 27850981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 567 - 641
Target Start/End: Complemental strand, 37884393 - 37884319
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| || ||||||    
T  37884393 cttatttgattcaatggtccctcaaataattttaaattttcatttttgtcccataattaataaaatgtacctttt 37884319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 567 - 631
Target Start/End: Complemental strand, 393754 - 393690
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  393754 cttatttgatccaacggtccctcaaataatttcaaattttcattttggtcccacaattaataaaa 393690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 1829753 - 1829820
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| ||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  1829753 cttatttgatccaacggtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgt 1829820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 561 - 634
Target Start/End: Original strand, 390211 - 390284
Alignment:
Q  561 aaatgacttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||| ||||||||||||| |||||||  |||||||||||| |||||||||| |||||||||||||||||||||    
T  390211 aaatggcttatttgattcattggtcccctaaataatttcaagttttcattttggtcccacaattaataaaacgt 390284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 553 - 634
Target Start/End: Original strand, 52239863 - 52239944
Alignment:
Q  553 taataaataaatgacttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||| ||| |||| ||||||||||  |||||||||||||||||||||||||||| |||||  ||||||||||||||||||||    
T  52239863 taattaattaatggcttatttgatctaatggtccctcaaataatttcaaatttttattttgatcccacaattaataaaacgt 52239944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 567 - 631
Target Start/End: Original strand, 1794411 - 1794475
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||  || ||||||||||||||    
T  1794411 cttatttgattcaatggtccctcaaataatttcaagttttcattttgatctcacaattaataaaa 1794475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 567 - 631
Target Start/End: Original strand, 4128993 - 4129057
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||    
T  4128993 cttatttgatccaatggttcctcaaataatttcaagttttcattttggtcccacaattaataaaa 4129057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 566 - 634
Target Start/End: Complemental strand, 42810320 - 42810252
Alignment:
Q  566 acttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||||||| |||| |||||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  42810320 acttatttgatccaatagtcccttaaataatttcaacttttcattttggtcccacaattaataaaacgt 42810252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 1188843 - 1188910
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| |||| ||||||||||||||||||| |||| ||||| |||||||||||||||||||||    
T  1188843 cttatttgatccaatagtccctcaaataatttcaagtttttattttggtcccacaattaataaaacgt 1188910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 2312598 - 2312531
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| || |||||||| | |||||||||| ||| ||||||||||||||||||||||||||||    
T  2312598 cttatttgatccattggtcccttagataatttcaagtttccattttagtcccacaattaataaaacgt 2312531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 630
Target Start/End: Complemental strand, 44503794 - 44503731
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaa 630  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||| ||| |||||||||||||    
T  44503794 cttatttgattcaatagtccctcaaataatttcaagtttttattttggtctcacaattaataaa 44503731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 581 - 631
Target Start/End: Complemental strand, 1588191 - 1588141
Alignment:
Q  581 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||    
T  1588191 tggtccctcaaataattttaagttttcattttagtcccacaattaataaaa 1588141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 557 - 634
Target Start/End: Complemental strand, 1190318 - 1190241
Alignment:
Q  557 aaataaatgacttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||| |||| |||||||||  || |||||||||||||||||| || |||||||||| |||||| ||||||||||||||    
T  1190318 aaattaatggcttatttgaaccattggtccctcaaataattttaagttttcattttggtcccataattaataaaacgt 1190241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 567 - 631
Target Start/End: Complemental strand, 53205599 - 53205535
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    ||||||||||||| | ||||| |||||||||||| ||||||||||| ||||||||||||| ||||    
T  53205599 cttatttgattcattagtcccccaaataatttcagattttcattttcgtcccacaattaaaaaaa 53205535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 2310923 - 2310990
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| |||||||||   || ||||||||| |||||||||| |||||||||||||||||||||    
T  2310923 cttatttgatccaatggtcctctaattaatttcaagttttcattttggtcccacaattaataaaacgt 2310990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 42871095 - 42871162
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| ||||||||||   | ||||||||||||||||||||  ||||||||||||||||||||    
T  42871095 cttatttgatccaatggtcccctgattaatttcaaattttcattttgatcccacaattaataaaacgt 42871162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 44501518 - 44501585
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||  || ||||||||||||||||||||| |||||||| | |||||| ||||||||||||||    
T  44501518 cttatttgaaccattggtccctcaaataatttcaagttttcattctggtcccataattaataaaacgt 44501585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 632
Target Start/End: Original strand, 11968511 - 11968576
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    ||||||||||   ||||| |||||||||||||||| |||||||||| ||| |||||||||||||||    
T  11968511 cttatttgatcttatggttcctcaaataatttcaagttttcattttggtctcacaattaataaaac 11968576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 565 - 631
Target Start/End: Original strand, 27847676 - 27847742
Alignment:
Q  565 gacttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    ||||||||||||  |||  | |||||||||||||||| |||| ||||| ||||||||||||||||||    
T  27847676 gacttatttgatctaataattcctcaaataatttcaagtttttattttggtcccacaattaataaaa 27847742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 632
Target Start/End: Original strand, 40792751 - 40792816
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    ||||||||||| ||||||||   || |||||| || |||||||||| |||||||||||||||||||    
T  40792751 cttatttgatttaatggtcctctaattaattttaagttttcattttggtcccacaattaataaaac 40792816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 4871480 - 4871413
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| || |||||||  |||||||||||  |||||||||| || | ||||||||||||||||    
T  4871480 cttatttgatccattggtccccaaaataatttcatgttttcattttggttctacaattaataaaacgt 4871413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 631
Target Start/End: Complemental strand, 42872414 - 42872351
Alignment:
Q  568 ttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    ||||||||||||||||||||  || ||||| | | |||||||||| |||||| |||||||||||    
T  42872414 ttatttgattcaatggtcccctaattaattaccatttttcattttggtcccataattaataaaa 42872351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 49344126 - 49344059
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| |||||||||   ||||||||| ||  ||| ||||| |||||||||||||||||||||    
T  49344126 cttatttgatccaatggtcctctaaataattttaagcttttattttggtcccacaattaataaaacgt 49344059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Original strand, 33231415 - 33231453
Alignment:
Q  593 taatttcaaattttcattttagtcccacaattaataaaa 631  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  33231415 taatttcatgttttcattttagtcccacaattaataaaa 33231453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 554 - 610
Target Start/End: Complemental strand, 15450204 - 15450148
Alignment:
Q  554 aataaataaatgacttatttgattcaatggtccctcaaataatttcaaattttcatt 610  Q
    |||| ||||| | ||||||||||||| |||||||| |||||||||||  ||||||||    
T  15450204 aatatataaaaggcttatttgattcattggtcccttaaataatttcaggttttcatt 15450148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 590 - 630
Target Start/End: Original strand, 52963592 - 52963632
Alignment:
Q  590 aaataatttcaaattttcattttagtcccacaattaataaa 630  Q
    |||||||||||| |||||||||| ||| |||||||||||||    
T  52963592 aaataatttcaagttttcattttggtctcacaattaataaa 52963632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 567 - 632
Target Start/End: Complemental strand, 11317484 - 11317419
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11317484 cttatttgattcaatggtccctcaaataatttcaaattttcattttggtcccacaattaataaaac 11317419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 567 - 641
Target Start/End: Complemental strand, 28562925 - 28562851
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | ||||||    
T  28562925 cttatttgattcaatggtccctcaaataatttcaaattttcattttggtcccataattaataaaacatacctttt 28562851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 568 - 641
Target Start/End: Complemental strand, 43034586 - 43034513
Alignment:
Q  568 ttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||    
T  43034586 ttatttgattcaatggtccctcaaataatttcaagttttcattttaatctcacaattaataaaacgtacctttt 43034513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 32469148 - 32469215
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||    
T  32469148 cttatttgattcaatggtccctcaaataatttcaagttttcattttgatcccacaattaataaaacgt 32469215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 568 - 633
Target Start/End: Complemental strand, 42641975 - 42641910
Alignment:
Q  568 ttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacg 633  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||    
T  42641975 ttatttgattcaatggtccctcaaataatttcaaatttttattttggtcccataattaataaaacg 42641910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 567 - 641
Target Start/End: Original strand, 43033082 - 43033156
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  43033082 cttatttgatccaatgatcccttaaataatttcaagttttcattttggtcccacaattaataaaacgtacctttt 43033156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 565 - 634
Target Start/End: Original strand, 28561366 - 28561435
Alignment:
Q  565 gacttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||||||||||||||||| ||||||||| || |||||||||| ||| |||||||||||||||||    
T  28561366 gacttatttgattcaatggtcccttaaataattttaagttttcattttggtctcacaattaataaaacgt 28561435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 7437877 - 7437810
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| |||||||  ||||||||||||||| |||||||||| |||||||||||||||||||||    
T  7437877 cttatttgatccaatggttgctcaaataatttcaagttttcattttggtcccacaattaataaaacgt 7437810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 11315933 - 11316000
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||| ||||| |||||||  |||||||||||| |||||||||| |||||||||||||||||||||    
T  11315933 cttatttaattcattggtcccctaaataatttcaagttttcattttggtcccacaattaataaaacgt 11316000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 569 - 631
Target Start/End: Original strand, 7436469 - 7436531
Alignment:
Q  569 tatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||| |||||||||||||||||||||||| |||| ||||| |||| |||||||||||||    
T  7436469 tatttgatccaatggtccctcaaataatttcaagtttttattttggtcctacaattaataaaa 7436531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 17459253 - 17459320
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| || | |||||| |||||||||||| |||||||||| ||| |||||||||||||||||    
T  17459253 cttatttgatccattagtcccttaaataatttcaagttttcattttggtcacacaattaataaaacgt 17459320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 558 - 632
Target Start/End: Original strand, 11547650 - 11547724
Alignment:
Q  558 aataaatgacttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||| ||||||||||| | |||||| | |||||||||||| |||||||||| ||| || ||||||||||||    
T  11547650 aataaatggcttatttgatttattggtcctttaaataatttcaagttttcattttggtctcataattaataaaac 11547724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 567 - 627
Target Start/End: Complemental strand, 6030586 - 6030526
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaat 627  Q
    |||||||||| |||| |||||||||||||||| || ||||||||||  |||||||||||||    
T  6030586 cttatttgatccaatagtccctcaaataatttgaagttttcattttgatcccacaattaat 6030526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 17460800 - 17460733
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| |||||||||   || ||||||||| ||||||||||  ||||||||||||||||||||    
T  17460800 cttatttgatccaatggtcctctaattaatttcaagttttcattttgatcccacaattaataaaacgt 17460733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 32470691 - 32470624
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| || | |||||  |||||||||||| |||| ||||| |||||||||||||||||||||    
T  32470691 cttatttgatccattagtcccctaaataatttcaagtttttattttggtcccacaattaataaaacgt 32470624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 631
Target Start/End: Complemental strand, 12359779 - 12359731
Alignment:
Q  583 gtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||| |||||||||||  ||||| |||||||||||||||||||||||    
T  12359779 gtcccttaaataatttcatgttttcgttttagtcccacaattaataaaa 12359731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 632
Target Start/End: Complemental strand, 2277571 - 2277520
Alignment:
Q  581 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    ||||||||||||||||||| | |||||||||| |||||| || |||||||||    
T  2277571 tggtccctcaaataatttccagttttcattttggtcccataagtaataaaac 2277520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Original strand, 6030631 - 6030669
Alignment:
Q  593 taatttcaaattttcattttagtcccacaattaataaaa 631  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  6030631 taatttcatgttttcattttagtcccacaattaataaaa 6030669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Complemental strand, 29220966 - 29220928
Alignment:
Q  593 taatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  29220966 taatttcatattttcattttggtcccacaattaataaaa 29220928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Complemental strand, 29334265 - 29334227
Alignment:
Q  593 taatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  29334265 taatttcatattttcattttggtcccacaattaataaaa 29334227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 631
Target Start/End: Original strand, 37956963 - 37957013
Alignment:
Q  581 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||| || |||||||||||||||||||| |||||| || ||||||||    
T  37956963 tggtcccttaattaatttcaaattttcattttggtcccataagtaataaaa 37957013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 432 - 486
Target Start/End: Complemental strand, 41099519 - 41099465
Alignment:
Q  432 atgtgtaatttccaggtgtgtcatagcaatttttgatgtgggaagaacaattttc 486  Q
    ||||||||||||||||||| |||||||||||| | | ||||||| | ||||||||    
T  41099519 atgtgtaatttccaggtgtttcatagcaatttctaaagtgggaaaagcaattttc 41099465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Original strand, 44191162 - 44191200
Alignment:
Q  593 taatttcaaattttcattttagtcccacaattaataaaa 631  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  44191162 taatttcatgttttcattttagtcccacaattaataaaa 44191200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 579 - 619
Target Start/End: Complemental strand, 23233800 - 23233760
Alignment:
Q  579 aatggtccctcaaataatttcaaattttcattttagtccca 619  Q
    ||||||||||||| ||||| |||||||||||||| ||||||    
T  23233800 aatggtccctcaactaattacaaattttcattttggtccca 23233760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 567 - 641
Target Start/End: Complemental strand, 32798648 - 32798574
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  32798648 cttatttgatgcaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgtacctttt 32798574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 44076479 - 44076412
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  44076479 cttatttgatccaatggtccctcaaataatttcaaatttttattttggtcccacaattaataaaacgt 44076412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 32695391 - 32695324
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| ||| |||||||||||||||||    
T  32695391 cttatttgattcattggtccctcaaataatttcaagttttcattttggtctcacaattaataaaacgt 32695324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 567 - 640
Target Start/End: Complemental strand, 41630240 - 41630167
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttccttt 640  Q
    |||||||||| ||||||| ||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  41630240 cttatttgatccaatggttccttaaataattttaaattttcattttagtctcacaattaataaaacgtaccttt 41630167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 567 - 632
Target Start/End: Original strand, 26696532 - 26696597
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||||||||||||||||  || ||||||||| |||||||||| |||||||||||||||||||    
T  26696532 cttatttgattcaatggtcccctaattaatttcaagttttcattttggtcccacaattaataaaac 26696597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 567 - 631
Target Start/End: Complemental strand, 45281304 - 45281240
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||||| |||| ||||||||||||||||||| |||||||||| |||| |||||||||||||    
T  45281304 cttatttgatccaatagtccctcaaataatttcaagttttcattttggtccaacaattaataaaa 45281240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 4810469 - 4810536
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||||||  |||||||||||||||| ||||||||||| ||||| |||||| ||||||||||||||    
T  4810469 cttatttgatctaatggtccctcaaatactttcaaatttttattttggtcccataattaataaaacgt 4810536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 32797138 - 32797205
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||||||  | |||||||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  32797138 cttatttgatctattggtcccttaaataatttcaagttttcattttggtcccacaattaataaaacgt 32797205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 567 - 612
Target Start/End: Complemental strand, 12850511 - 12850466
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcatttt 612  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  12850511 cttatttgatccaatggtccctcaaataatttcaaattttcatttt 12850466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 582 - 634
Target Start/End: Original strand, 22551022 - 22551074
Alignment:
Q  582 ggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||||||||||||| |||| ||||| |||||||||||||||||||||    
T  22551022 ggtccctcaaataatttcaagtttttattttggtcccacaattaataaaacgt 22551074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 562 - 634
Target Start/End: Original strand, 42870808 - 42870880
Alignment:
Q  562 aatgacttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||| |||||||||| |||||||  |  |||||||||||| |||||||||| |||||||||||||||||||||    
T  42870808 aatggcttatttgatccaatggtttcctaaataatttcaagttttcattttggtcccacaattaataaaacgt 42870880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 30786676 - 30786743
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||||||||||||| ||||||||||| || ||||||||||  || || ||||||||||||||    
T  30786676 cttatttgattcaatggtccttcaaataattttaagttttcattttgatcacataattaataaaacgt 30786743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 632
Target Start/End: Complemental strand, 212828 - 212763
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||||| || | ||||| |||||||||||| ||||||||||| ||||||||||||| |||||    
T  212828 cttatttgatccattagtcccccaaataatttcagattttcattttcgtcccacaattaaaaaaac 212763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 632
Target Start/End: Original strand, 239426 - 239491
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||||| || | ||||| |||||||||||| ||||||||||| ||||||||||||| |||||    
T  239426 cttatttgatccattagtcccccaaataatttcagattttcattttcgtcccacaattaaaaaaac 239491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 632
Target Start/End: Complemental strand, 726451 - 726386
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||||| || | ||||| |||||||||||| ||||||||||| ||||||||||||| |||||    
T  726451 cttatttgatccattagtcccccaaataatttcagattttcattttcgtcccacaattaaaaaaac 726386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 632
Target Start/End: Original strand, 792781 - 792846
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||||| || | ||||| |||||||||||| ||||||||||| ||||||||||||| |||||    
T  792781 cttatttgatccattagtcccccaaataatttcagattttcattttcgtcccacaattaaaaaaac 792846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 632
Target Start/End: Complemental strand, 798952 - 798887
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||||| || | ||||| |||||||||||| ||||||||||| ||||||||||||| |||||    
T  798952 cttatttgatccattagtcccccaaataatttcagattttcattttcgtcccacaattaaaaaaac 798887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 632
Target Start/End: Original strand, 32693830 - 32693895
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    ||||||||||||||||||||   || |||||| || |||||||||| |||||||||||||||||||    
T  32693830 cttatttgattcaatggtcctctaattaattttaagttttcattttggtcccacaattaataaaac 32693895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 634
Target Start/End: Original strand, 45279703 - 45279747
Alignment:
Q  590 aaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||||||||||||||||||||  ||||||||||||||||    
T  45279703 aaataatttcaaattttcattttagtcatacaattaataaaacgt 45279747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 8570118 - 8570185
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| ||||||||||  || ||||||||  |||||||||| |||| ||||||||||||||||    
T  8570118 cttatttgatccaatggtcccctaattaatttcacgttttcattttggtcctacaattaataaaacgt 8570185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 581 - 632
Target Start/End: Original strand, 28418820 - 28418871
Alignment:
Q  581 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||| |||||||||||| |||||||||| |||||| ||||||||||||    
T  28418820 tggtcccttaaataatttcaatttttcattttggtcccataattaataaaac 28418871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 581 - 632
Target Start/End: Complemental strand, 28420276 - 28420225
Alignment:
Q  581 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||| |||||||||||| |||||||||| |||||| ||||||||||||    
T  28420276 tggtcccttaaataatttcaatttttcattttggtcccataattaataaaac 28420225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 42872305 - 42872238
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| ||||||||||| ||||||||| || ||||||||||| || || ||| ||||||||||    
T  42872305 cttatttgatccaatggtcccttaaataattttaagttttcattttaatctcataatgaataaaacgt 42872238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 590 - 632
Target Start/End: Original strand, 6397806 - 6397848
Alignment:
Q  590 aaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  6397806 aaataatttcatattttcattttggtcccacaattaataaaac 6397848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 632
Target Start/End: Original strand, 211612 - 211660
Alignment:
Q  584 tccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    ||||| |||||||||||  |||||||||| |||||||||||||||||||    
T  211612 tcccttaaataatttcatgttttcattttggtcccacaattaataaaac 211660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 632
Target Start/End: Complemental strand, 240644 - 240596
Alignment:
Q  584 tccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    ||||| |||||||||||  |||||||||| |||||||||||||||||||    
T  240644 tcccttaaataatttcatgttttcattttggtcccacaattaataaaac 240596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 632
Target Start/End: Original strand, 725235 - 725283
Alignment:
Q  584 tccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    ||||| |||||||||||  |||||||||| |||||||||||||||||||    
T  725235 tcccttaaataatttcatgttttcattttggtcccacaattaataaaac 725283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 632
Target Start/End: Complemental strand, 793999 - 793951
Alignment:
Q  584 tccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    ||||| |||||||||||  |||||||||| |||||||||||||||||||    
T  793999 tcccttaaataatttcatgttttcattttggtcccacaattaataaaac 793951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 631
Target Start/End: Complemental strand, 13198057 - 13197993
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||| | ||||||||| | |||||||||| | ||||| |||| ||||||||||||||||||    
T  13198057 cttatttgctccaatggtccattaaataatttcgagttttcgttttggtcccacaattaataaaa 13197993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 631
Target Start/End: Complemental strand, 30787716 - 30787652
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    ||||||||||  |||| || |||||||||||| || |||||||||| |||||| |||||||||||    
T  30787716 cttatttgatctaatgttctctcaaataattttaagttttcattttggtcccataattaataaaa 30787652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 634
Target Start/End: Original strand, 41629709 - 41629775
Alignment:
Q  568 ttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||||| || | |||||  |||||||||||| |||| ||||| ||| |||||||||||||||||    
T  41629709 ttatttgatccattagtcccctaaataatttcaagtttttattttggtctcacaattaataaaacgt 41629775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 632
Target Start/End: Complemental strand, 17702391 - 17702326
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||| |||||| | |||||||| || ||||||| |||||||||||| |||||| || |||||||||    
T  17702391 cttacttgatttattggtcccttaattaatttccaattttcattttggtcccataactaataaaac 17702326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 47456491 - 47456424
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  47456491 cttatttgatccaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgt 47456424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 559 - 634
Target Start/End: Complemental strand, 40509858 - 40509783
Alignment:
Q  559 ataaatgacttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||| |||||||| ||||||||||||  |||||||||||| |||||||||| |||||||||||||||||||||    
T  40509858 ataaatggcttatttgtttcaatggtcccctaaataatttcaagttttcattttggtcccacaattaataaaacgt 40509783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 567 - 641
Target Start/End: Complemental strand, 32256511 - 32256437
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||||||||||| || ||||||    
T  32256511 cttatttgatccaatggtccctcaaataatttcaagttttcattttggtcccataattaataaaatgtacctttt 32256437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 567 - 641
Target Start/End: Original strand, 33096869 - 33096943
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||||||| |||||||||||||||||||||||| || ||||||||| ||||||||||||||||| | ||||||    
T  33096869 cttatttgatccaatggtccctcaaataatttcaagttctcattttaggcccacaattaataaaacttacctttt 33096943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 559 - 634
Target Start/End: Complemental strand, 22115289 - 22115213
Alignment:
Q  559 ataaatgacttatttgattcaatggtccc-tcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||| |||||||| |||||||||||| | |||||||||||| |||||||||| |||||||||||||||||||||    
T  22115289 ataaatggcttatttgtttcaatggtcccctaaaataatttcaagttttcattttggtcccacaattaataaaacgt 22115213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 30310121 - 30310188
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| |||| |||||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  30310121 cttatttgatccaatagtcccttaaataatttcaagttttcatttttgtcccacaattaataaaacgt 30310188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 40508378 - 40508445
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| ||||||||||  |||||||||||| |||||||||| |||||||||||||||||||||    
T  40508378 cttatttgatccaatggtcccctaaataatttcaagttttcatttttgtcccacaattaataaaacgt 40508445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 45455488 - 45455421
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| | ||||||||| || |||||||||||||||||||| |||||||||||||||||||||    
T  45455488 cttatttgatccgatggtcccttaattaatttcaaattttcattttggtcccacaattaataaaacgt 45455421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 47454337 - 47454404
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| || |||||||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  47454337 cttatttgatccagtggtccctcaaataatttcaagctttcattttggtcccacaattaataaaacgt 47454404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 568 - 634
Target Start/End: Complemental strand, 43460938 - 43460872
Alignment:
Q  568 ttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||||||||||| |||||||||| |||| || |||||||||| |||||||||||||||||||||    
T  43460938 ttatttgattcaatgatccctcaaattatttgaagttttcattttggtcccacaattaataaaacgt 43460872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 6173566 - 6173499
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||   |||| ||||||||||||||    
T  6173566 cttatttgatccaatggtccctcaaataatttcaagttttcattttgtacccataattaataaaacgt 6173499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 568 - 631
Target Start/End: Original strand, 46835676 - 46835739
Alignment:
Q  568 ttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||| |||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||||||    
T  46835676 ttatatgatccaatggtcccttaaataatttcaaattttctttttagtcctacaattaataaaa 46835739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 567 - 621
Target Start/End: Original strand, 40811340 - 40811394
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccaca 621  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  40811340 cttatttgatccaatggtccctcaaataatttcaagttttcattttggtcccaca 40811394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 567 - 632
Target Start/End: Complemental strand, 30311585 - 30311520
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||||| || | |||||  ||||||||||||||||||||||| |||||||||||||||||||    
T  30311585 cttatttgatccattagtcccctaaataatttcaaattttcattttggtcccacaattaataaaac 30311520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 581 - 634
Target Start/End: Original strand, 32255003 - 32255056
Alignment:
Q  581 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||||||||||||||||||| ||||| |||||| ||||||||||||||    
T  32255003 tggtccctcaaataatttcaaatttttattttggtcccataattaataaaacgt 32255056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 574 - 634
Target Start/End: Original strand, 30333292 - 30333352
Alignment:
Q  574 gattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||| |||||||  |||||||||||| |||||||||| |||||||||||||||||||||    
T  30333292 gattcattggtcccctaaataatttcaagttttcattttggtcccacaattaataaaacgt 30333352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 593 - 641
Target Start/End: Complemental strand, 30334727 - 30334679
Alignment:
Q  593 taatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  30334727 taatttcaagttttcattttagtcccacaattaataaaacgtacctttt 30334679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 4300164 - 4300097
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| |||| |||||   ||||||||||| |||||||||| |||||||||||||||||||||    
T  4300164 cttatttgatccaatcgtcccctgaataatttcaagttttcattttggtcccacaattaataaaacgt 4300097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 32602933 - 32603000
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| || |||||| |||||||||||||| |||| ||||| |||||| ||||||||||||||    
T  32602933 cttatttgatccattggtccttcaaataatttcaagtttttattttggtcccataattaataaaacgt 32603000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 43459455 - 43459522
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| || | |||||  |||||||||||| |||||||||| |||||||||||||||||||||    
T  43459455 cttatttgatccattagtcccctaaataatttcaagttttcattttggtcccacaattaataaaacgt 43459522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 591 - 634
Target Start/End: Original strand, 11344531 - 11344574
Alignment:
Q  591 aataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  11344531 aataatttcaagttttcattttggtcccacaattaataaaacgt 11344574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 632
Target Start/End: Complemental strand, 33779200 - 33779135
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||||| || | |||||  |||||||||||| |||||||||| | |||||||||||||||||    
T  33779200 cttatttgatccattagtcccctaaataatttcaagttttcattttggccccacaattaataaaac 33779135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 631
Target Start/End: Original strand, 4298713 - 4298777
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||||| ||||||||||  ||||||||| || |||| |||||  |||||||||||||||||    
T  4298713 cttatttgatccaatggtcccctaaataattttaagtttttattttgatcccacaattaataaaa 4298777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 631
Target Start/End: Original strand, 47059108 - 47059172
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||| ||||||||||||||  || |||||| || |||||||||| |||| |||||||||||||    
T  47059108 cttattagattcaatggtcccctaattaattttaagttttcattttggtcctacaattaataaaa 47059172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 631
Target Start/End: Original strand, 41078770 - 41078820
Alignment:
Q  581 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    ||||||||||| ||||||| | |||||||||| ||||||||||| ||||||    
T  41078770 tggtccctcaattaatttccatttttcattttggtcccacaattgataaaa 41078820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 632
Target Start/End: Original strand, 45454038 - 45454103
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    ||||||||||| |||||||||  || ||||||||  |||||||||| ||| || ||||||||||||    
T  45454038 cttatttgattaaatggtcccctaattaatttcacgttttcattttggtctcataattaataaaac 45454103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 567 - 641
Target Start/End: Complemental strand, 325301 - 325227
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    ||||||||||  ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  325301 cttatttgatctaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgtacctttt 325227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 30859288 - 30859221
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||||||||| | ||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  30859288 cttatttgattcattagtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgt 30859221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 565 - 634
Target Start/End: Complemental strand, 27705434 - 27705365
Alignment:
Q  565 gacttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||| |||  ||||||||||||||||    
T  27705434 gacttatttgattcaatggttcctcaaataatttcaagttttcattttggtcatacaattaataaaacgt 27705365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 22047732 - 22047799
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| ||||||||||| || ||||||||| |||||||||| |||||||||||||||||||||    
T  22047732 cttatttgatccaatggtcccttaattaatttcaagttttcattttggtcccacaattaataaaacgt 22047799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 39603853 - 39603920
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| || || |||||||||||||||||| ||||||||||  ||||||||||||||||||||    
T  39603853 cttatttgatccattgatccctcaaataatttcaagttttcattttgatcccacaattaataaaacgt 39603920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 568 - 632
Target Start/End: Complemental strand, 39605584 - 39605520
Alignment:
Q  568 ttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||||||||||||||   || ||||||||| |||||||||| |||||||||||||||||||    
T  39605584 ttatttgattcaatggtcctctaattaatttcaagttttcattttggtcccacaattaataaaac 39605520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 30857800 - 30857867
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||||||||||||||||   || |||||| || |||||||||| |||||||||||||||||||||    
T  30857800 cttatttgattcaatggtcctctaattaattttaagttttcattttggtcccacaattaataaaacgt 30857867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 626
Target Start/End: Complemental strand, 41798063 - 41798004
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaa 626  Q
    |||||||||| || ||||||||||||||||||||| |||| ||||| |||||||||||||    
T  41798063 cttatttgatccattggtccctcaaataatttcaagtttttattttggtcccacaattaa 41798004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 590 - 632
Target Start/End: Original strand, 11262279 - 11262321
Alignment:
Q  590 aaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    ||||||||| || ||||||||||||||||||||||||||||||    
T  11262279 aaataattttaagttttcattttagtcccacaattaataaaac 11262321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 590 - 634
Target Start/End: Complemental strand, 22049229 - 22049185
Alignment:
Q  590 aaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||    
T  22049229 aaataatttcaagttttcattttggtcccataattaataaaacgt 22049185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 632
Target Start/End: Original strand, 9169612 - 9169651
Alignment:
Q  593 taatttcaaattttcattttagtcccacaattaataaaac 632  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  9169612 taatttcaagttttcattttagtcccataattaataaaac 9169651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 632
Target Start/End: Original strand, 32757839 - 32757890
Alignment:
Q  581 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    ||||||||||||||||||| | |||||||||| |||||| || |||||||||    
T  32757839 tggtccctcaaataatttccagttttcattttggtcccataaataataaaac 32757890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 562 - 631
Target Start/End: Original strand, 15548235 - 15548302
Alignment:
Q  562 aatgacttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    ||||||||||||||| || |||||||  |||||||||||||||||  ||||  ||||| |||||||||||    
T  15548235 aatgacttatttgatccattggtcccctaaataatttcaaatttt--tttttatcccataattaataaaa 15548302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Original strand, 20538079 - 20538117
Alignment:
Q  593 taatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  20538079 taatttcaaattttcattttggtcccataattaataaaa 20538117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 641
Target Start/End: Complemental strand, 24509140 - 24509078
Alignment:
Q  579 aatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||||||| || ||||| | |||||||||||| |||||| || ||||||||||| ||||||    
T  24509140 aatggtcccttaattaattaccaattttcattttggtcccataagtaataaaacgtacctttt 24509078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 617
Target Start/End: Original strand, 324068 - 324117
Alignment:
Q  568 ttatttgattcaatggtccctcaaataatttcaaattttcattttagtcc 617  Q
    |||||| |||| |||||| ||||||||||||||| |||||||||| ||||    
T  324068 ttatttcattcgatggtcactcaaataatttcaatttttcattttggtcc 324117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 581 - 641
Target Start/End: Original strand, 24503198 - 24503258
Alignment:
Q  581 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||||| || ||||| | |||||||||||| |||||| || ||||||||||| ||||||    
T  24503198 tggtcccttaattaattaccaattttcattttggtcccataagtaataaaacgtacctttt 24503258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 567 - 641
Target Start/End: Original strand, 18197147 - 18197221
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||||||| |||  |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  18197147 cttatttgatccaaatgtccctcaaataatttcaaattttcattttggtcccacaattaataaaacgtacctttt 18197221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 567 - 641
Target Start/End: Complemental strand, 38242632 - 38242558
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||  |||||||||||||||||||| ||||||    
T  38242632 cttatttgattcaaaggtccctcaaataatttcaagttttcattttgatcccacaattaataaaacgtacctttt 38242558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 567 - 632
Target Start/End: Complemental strand, 3210047 - 3209982
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||    
T  3210047 cttatttgattcaatggtcccttaaataattttaaattttcattttggtcccacaattaataaaac 3209982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 53624477 - 53624410
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||  || |||||||||||||||||    
T  53624477 cttatttgatccaatggtccctcaaataatttcaagttttcattttgatctcacaattaataaaacgt 53624410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 567 - 632
Target Start/End: Complemental strand, 12108099 - 12108034
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    ||||||||||||||| |||||| |||||||||||| |||||||||| ||||||||| |||||||||    
T  12108099 cttatttgattcaatagtcccttaaataatttcaagttttcattttggtcccacaactaataaaac 12108034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 34818086 - 34818153
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||||||||||||||||   || ||||||||| |||||||||| |||||||||||||||||||||    
T  34818086 cttatttgattcaatggtcctctaattaatttcaagttttcattttggtcccacaattaataaaacgt 34818153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 38240906 - 38240973
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| || ||||||||  |||||||||||||||| ||||| |||||||||||||||||||||    
T  38240906 cttatttgatccattggtcccttgaataatttcaaatttttattttggtcccacaattaataaaacgt 38240973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 40244187 - 40244254
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| || |||||||| |||||||||||| |||||||||| ||| |||||||||||||||||    
T  40244187 cttatttgatccattggtcccttaaataatttcaagttttcattttggtctcacaattaataaaacgt 40244254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 630
Target Start/End: Original strand, 12105290 - 12105353
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaa 630  Q
    ||||||| |||||||||| |||||||||||||||| ||||||| || | |||||||||||||||    
T  12105290 cttatttaattcaatggttcctcaaataatttcaagttttcatattggccccacaattaataaa 12105353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 34819400 - 34819333
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| || | ||||||||||||||||||| ||||||||||  ||| ||||||||||||||||    
T  34819400 cttatttgatccattagtccctcaaataatttcaagttttcattttgatcctacaattaataaaacgt 34819333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 568 - 640
Target Start/End: Complemental strand, 23443572 - 23443500
Alignment:
Q  568 ttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttccttt 640  Q
    ||||||||| ||||| ||||| || |||||| || |||||||||| |||||| |||||||||||||| |||||    
T  23443572 ttatttgatccaatgatcccttaattaattttaacttttcattttggtcccaaaattaataaaacgtaccttt 23443500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 565 - 632
Target Start/End: Original strand, 18442250 - 18442317
Alignment:
Q  565 gacttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||| ||||||| || ||||||   |||||||||||| |||||||||| |||||||||||||||||||    
T  18442250 gactgatttgatccattggtcctctaaataatttcaagttttcattttggtcccacaattaataaaac 18442317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 565 - 632
Target Start/End: Original strand, 19487324 - 19487391
Alignment:
Q  565 gacttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||| ||||||| || ||||||   |||||||||||| |||||||||| |||||||||||||||||||    
T  19487324 gactgatttgatccattggtcctctaaataatttcaagttttcattttggtcccacaattaataaaac 19487391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 37735306 - 37735373
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| || |||||| | ||||||||| || |||||||||| |||||| ||||||||||||||    
T  37735306 cttatttgatccattggtcctttaaataattttaagttttcattttggtcccataattaataaaacgt 37735373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 37736197 - 37736130
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||| ||||||| | |||||| |||||||||||  |||||||||| ||| |||||||||||||||||    
T  37736197 cttatgtgattcattagtcccttaaataatttcatgttttcattttggtctcacaattaataaaacgt 37736130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 581 - 632
Target Start/End: Original strand, 50809435 - 50809486
Alignment:
Q  581 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||| |||||||||||| |||||||||| |||||| ||||||||||||    
T  50809435 tggtcccttaaataatttcaatttttcattttggtcccataattaataaaac 50809486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 581 - 632
Target Start/End: Complemental strand, 50810936 - 50810885
Alignment:
Q  581 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||| |||||||||||| |||||||||| |||||| ||||||||||||    
T  50810936 tggtcccttaaataatttcaatttttcattttggtcccataattaataaaac 50810885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 581 - 632
Target Start/End: Original strand, 50864928 - 50864979
Alignment:
Q  581 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||| |||||||||||| |||||||||| |||||| ||||||||||||    
T  50864928 tggtcccttaaataatttcaatttttcattttggtcccataattaataaaac 50864979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 581 - 632
Target Start/End: Complemental strand, 50866427 - 50866376
Alignment:
Q  581 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||| |||||||||||| |||||||||| |||||| ||||||||||||    
T  50866427 tggtcccttaaataatttcaatttttcattttggtcccataattaataaaac 50866376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 53194986 - 53194919
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||| |||||||| || ||  ||||||||||| |||||||||| |||||| ||||||||||||||    
T  53194986 cttatttaattcaatgatctcttgaataatttcaagttttcattttggtcccataattaataaaacgt 53194919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 590 - 632
Target Start/End: Complemental strand, 8796406 - 8796364
Alignment:
Q  590 aaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  8796406 aaataatttcaaatttttattttagtctcacaattaataaaac 8796364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 632
Target Start/End: Complemental strand, 18458772 - 18458708
Alignment:
Q  568 ttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    ||||||||| || | |||||  |||||||||||| |||| ||||| |||||||||||||||||||    
T  18458772 ttatttgatccattagtcccctaaataatttcaagtttttattttggtcccacaattaataaaac 18458708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 631
Target Start/End: Complemental strand, 36176623 - 36176559
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||||| ||||||||||   | ||||||||  |||||||||| ||||||||||||||||||    
T  36176623 cttatttgatccaatggtcccctgattaatttcatgttttcattttggtcccacaattaataaaa 36176559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 53421877 - 53421810
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||||||||||||| || ||  || |||||| |  ||||||||||||||| ||||||||||||||||    
T  53421877 cttatttgattcaattgttccctaattaattttacgttttcattttagtcctacaattaataaaacgt 53421810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 634
Target Start/End: Original strand, 41544663 - 41544729
Alignment:
Q  568 ttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    ||||| |||||| |||||| | |||||||||||| |||||||||| |||| | |||||||| |||||    
T  41544663 ttattagattcattggtccattaaataatttcaagttttcattttggtcctataattaatataacgt 41544729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 593 - 634
Target Start/End: Original strand, 53420342 - 53420383
Alignment:
Q  593 taatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||| ||||||||||| |||| ||||||||||||||||    
T  53420342 taatttcatattttcattttggtcctacaattaataaaacgt 53420383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 575 - 619
Target Start/End: Complemental strand, 10301926 - 10301882
Alignment:
Q  575 attcaatggtccctcaaataatttcaaattttcattttagtccca 619  Q
    ||||||||||||||||| ||||||| | |||||||||| ||||||    
T  10301926 attcaatggtccctcaactaatttccatttttcattttggtccca 10301882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 631
Target Start/End: Original strand, 40364319 - 40364383
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    ||||||||||  |||||| ||  |||||||||||| |||||||||| |||| | |||||||||||    
T  40364319 cttatttgatctaatggttccctaaataatttcaagttttcattttggtcctaaaattaataaaa 40364383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 631
Target Start/End: Original strand, 53187559 - 53187623
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    ||||||||||  |||||||||  |||||||||||| ||||||||||  ||  |||||||||||||    
T  53187559 cttatttgatcgaatggtcccctaaataatttcaagttttcattttgatcttacaattaataaaa 53187623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 109861 - 109794
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||||||||||||||| |||||||||||| |||||||||| |||| ||||||||||||||||    
T  109861 cttatttgattcaatggtcccttaaataatttcaagttttcattttggtcctacaattaataaaacgt 109794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 567 - 641
Target Start/End: Original strand, 34023886 - 34023960
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    ||||||||||  |||||||||||||||||||| || |||||||||| || |||||||||||||||||| ||||||    
T  34023886 cttatttgatcaaatggtccctcaaataattttaagttttcattttggtaccacaattaataaaacgtacctttt 34023960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 567 - 631
Target Start/End: Complemental strand, 15730146 - 15730082
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||| |||||| ||||||||||| ||||||| | |||||||||| ||||||||||||||||||    
T  15730146 cttattagattcattggtccctcaattaatttccatttttcattttggtcccacaattaataaaa 15730082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 587 - 631
Target Start/End: Complemental strand, 34024160 - 34024116
Alignment:
Q  587 ctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  34024160 ctcaaataatttcaaattttcattttggtcccacaattaataaaa 34024116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 6452627 - 6452560
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| || |||||||  |||||||||||| |||||||||| |||||| ||||||||||||||    
T  6452627 cttatttgatccattggtcccctaaataatttcaagttttcattttggtcccataattaataaaacgt 6452560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 630
Target Start/End: Complemental strand, 7311840 - 7311777
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaa 630  Q
    ||||||| |||||||||||||| ||||||||| || ||||||||||  ||||||||||||||||    
T  7311840 cttatttaattcaatggtcccttaaataattttaagttttcattttgatcccacaattaataaa 7311777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 581 - 632
Target Start/End: Original strand, 232190 - 232241
Alignment:
Q  581 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    |||||||| |||||||||||| |||||||||| |||||| ||||||||||||    
T  232190 tggtcccttaaataatttcaatttttcattttggtcccataattaataaaac 232241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 565 - 631
Target Start/End: Complemental strand, 27082263 - 27082196
Alignment:
Q  565 gacttatttgattcaatggtccctca-aataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||| ||| |||||||||| |  ||||||||| |||||||||||| ||||||||||||||||||    
T  27082263 gacttattcgatccaatggtccccctgaataatttcgaattttcattttggtcccacaattaataaaa 27082196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 565 - 628
Target Start/End: Complemental strand, 27967167 - 27967104
Alignment:
Q  565 gacttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaata 628  Q
    |||||||||||| |||||||||| ||||||||| | | ||||||||||  ||||||||||||||    
T  27967167 gacttatttgatccaatggtcccccaaataattcctagttttcattttgatcccacaattaata 27967104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 7310276 - 7310343
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| ||  ||||| | ||||||||| || |||||||||| |||||| ||||||||||||||    
T  7310276 cttatttgatccatcggtcctttaaataattttaagttttcattttggtcccataattaataaaacgt 7310343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 631
Target Start/End: Original strand, 27080925 - 27080988
Alignment:
Q  568 ttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    ||||||||| ||||| ||||| |||||||||| | |||||||||| |||  |||||||||||||    
T  27080925 ttatttgatccaatgatcccttaaataatttcgagttttcattttggtcttacaattaataaaa 27080988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 631
Target Start/End: Complemental strand, 233666 - 233616
Alignment:
Q  581 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||| | |||||||||||| |||||||||| |||||| |||||||||||    
T  233666 tggtcctttaaataatttcaatttttcattttggtcccataattaataaaa 233616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Complemental strand, 2688014 - 2687976
Alignment:
Q  593 taatttcaaattttcattttagtcccacaattaataaaa 631  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  2688014 taatttcatgttttcattttagtcccacaattaataaaa 2687976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Original strand, 6701406 - 6701444
Alignment:
Q  593 taatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  6701406 taatttcatattttcattttggtcccacaattaataaaa 6701444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Complemental strand, 6702960 - 6702922
Alignment:
Q  593 taatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  6702960 taatttcatattttcattttggtcccacaattaataaaa 6702922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Complemental strand, 18346840 - 18346802
Alignment:
Q  593 taatttcaaattttcattttagtcccacaattaataaaa 631  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  18346840 taatttcatattttcattttggtcccacaattaataaaa 18346802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 54301 - 54234
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||||||| || ||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||    
T  54301 cttatttgatccattggtccctcaaataatttcaagttttaattttggtcgcacaattaataaaacgt 54234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 631
Target Start/End: Original strand, 52596 - 52656
Alignment:
Q  571 tttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaa 631  Q
    ||||||||||||||||   || ||||||||| ||||||||||  |||||||||||||||||    
T  52596 tttgattcaatggtcctctaattaatttcaagttttcattttgatcccacaattaataaaa 52656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 634
Target Start/End: Complemental strand, 43684 - 43624
Alignment:
Q  574 gattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgt 634  Q
    |||||| |||||||||||||||||| || |||| ||||| |||||| ||||||||||||||    
T  43684 gattcattggtccctcaaataattttaagtttttattttggtcccataattaataaaacgt 43624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1152 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1152
Description:

Target: scaffold1152; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 581 - 641
Target Start/End: Complemental strand, 2577 - 2518
Alignment:
Q  581 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    ||||||||||| ||||||| | |||||||||| |||||||||||||||||| || ||||||    
T  2577 tggtccctcaattaatttcca-ttttcattttggtcccacaattaataaaaagtacctttt 2518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 632
Target Start/End: Complemental strand, 1187 - 1136
Alignment:
Q  581 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaac 632  Q
    ||||||||||||||||||| | |||||||||| |||||| || |||||||||    
T  1187 tggtccctcaaataatttccagttttcattttggtcccataagtaataaaac 1136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 567 - 641
Target Start/End: Original strand, 21127 - 21201
Alignment:
Q  567 cttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgttcctttt 641  Q
    |||||| ||| || ||| ||||||| ||||||  | ||||||||||||||||| ||||||||||| || ||||||    
T  21127 cttattagatccattggcccctcaattaattttcatttttcattttagtcccataattaataaaaagtacctttt 21201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University