View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1051_low_2 (Length: 525)
Name: NF1051_low_2
Description: NF1051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1051_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 7 - 496
Target Start/End: Original strand, 16496648 - 16497136
Alignment:
| Q |
7 |
tccaataatatctcaagatttgcttcgaacatcttctctgcttcaaaccttaattattcttccaatcgcaacaaaacttgggatcttctctgcttcaatt |
106 |
Q |
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| T |
16496648 |
tccaataatatctcaagatttgcttcgaacatcttctctgcttcaaaccttaattattcttccaatcgcaacaaaacttgggatcttctctgcttcaatt |
16496747 |
T |
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| Q |
107 |
tctctgaaaagtgggttatagatgtaagtgctatggtgttaaaagtaaatttggacgttgttgtggtgatgaggataaacatgaagtttagatgaccatc |
206 |
Q |
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| T |
16496748 |
tctctgaagagtgggttatagatgtaagtgttatggtgttaaaagtaaatttggacgttgttgtggtgatgaggataataatgaagtttagatgaccatc |
16496847 |
T |
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| Q |
207 |
gaccatttagtgtagttagattatgctaatagttatttatcattgatatgtttgatttttataatttctacaatctaccgaaatctaataggttttccat |
306 |
Q |
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| T |
16496848 |
gaccatttagtatagttagattatgctaatagttatttatcattgctatgtttgatttttataatttctacaatctactgaaatctaataggttttccat |
16496947 |
T |
|
| Q |
307 |
atatgcatatgacttgtaattttgttctttatgtgttgagtacttctttcaagatgtaaatcattctaattgttcttgttttaaatcaggttgtgacaaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16496948 |
atatgcatatgacttgtaattttgttctttatgtgttgagtacttctttcaagatgtaaatcattctaattgttcttgttttaaatcaggttgtgacaaa |
16497047 |
T |
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| Q |
407 |
gtcttcatataatgttcattttgtttaggtttatcttatattatgatgtttagcatgcataaggcaatcttcaacaaaaaccacaaaatc |
496 |
Q |
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| T |
16497048 |
gtcttcatataatgttcattttgtttagg-ttatcttatattatgatgtttagcatgcataaggcaatcttcaacaaaaaccacaaaatc |
16497136 |
T |
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