View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1051_low_3 (Length: 386)

Name: NF1051_low_3
Description: NF1051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1051_low_3
NF1051_low_3
[»] chr6 (6 HSPs)
chr6 (20-178)||(12950663-12950821)
chr6 (112-273)||(12901510-12901671)
chr6 (299-386)||(12950479-12950566)
chr6 (203-276)||(12950590-12950663)
chr6 (299-386)||(12901405-12901489)
chr6 (20-98)||(12901660-12901738)
[»] chr7 (1 HSPs)
chr7 (153-233)||(3761155-3761235)
[»] chr5 (3 HSPs)
chr5 (131-276)||(31392376-31392524)
chr5 (299-368)||(31392296-31392364)
chr5 (175-272)||(34221329-34221429)
[»] scaffold0148 (1 HSPs)
scaffold0148 (188-272)||(33902-33989)
[»] chr8 (3 HSPs)
chr8 (177-271)||(7493691-7493785)
chr8 (168-229)||(27656309-27656370)
chr8 (188-244)||(21138345-21138401)
[»] chr1 (1 HSPs)
chr1 (175-251)||(43346855-43346931)


Alignment Details
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 12950821 - 12950663
Alignment:
Q  20 agtggctactatgatgcaacgacaattaactgctgctctaccagcggtagttagctgtcaatctacaaacggtagttacttaccattctatcaacggtag 119  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12950821 agtggctactatcatgcaacgacaattaactgctgctctaccagcggtagttagttgtcaatctacaaacggtagttacttaccattctatcaacggtag 12950722  T
Q  120 ttacctactgctgcgagtatatcacagaaacttcaaaatatagcagaaaaatttacaaa 178  Q
    |||||||||| || |||||||||||| |||| |||||||||||||||||||||||||||    
T  12950721 ttacctactgttgtgagtatatcacaaaaacatcaaaatatagcagaaaaatttacaaa 12950663  T

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Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 112 - 273
Target Start/End: Complemental strand, 12901671 - 12901510
Alignment:
Q  112 aacggtagttacctactgctgcgagtatatcacagaaacttcaaaatatagcagaaaaatttacaaatgtaaacgtgttaaaagatgcattaactgtttc 211  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  12901671 aacggtagttacctactgttgcgagtatatcacaaaaacttcaaaatatagcagtaaaatttacaagtgtaaacgtgttaaaagatgcattgactgtttc 12901572  T
Q  212 ttaacgtcaaaagtgtgtagaagccttgtagcactccttcaatgatttgagactaagattgt 273  Q
    |||  |||||| | |||||||||||||||| |||||||||||||||||||||| || |||||    
T  12901571 ttattgtcaaatgcgtgtagaagccttgtaacactccttcaatgatttgagacaaatattgt 12901510  T

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Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 299 - 386
Target Start/End: Complemental strand, 12950566 - 12950479
Alignment:
Q  299 gcactttagtggttttgatggaagagactaaaaaagtgatggatgaacagtgaggtaggagtaggttgtgctgattttggtgagtttc 386  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  12950566 gcactttagtggttttgatggaagagacaaaaaaagtgatggatgaacagtgaggtaggagtaggttgtgctggttttggtaagtttc 12950479  T

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Target: chr6; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 12950663 - 12950590
Alignment:
Q  203 aactgtttcttaacgtcaaaagtgtgtagaagccttgtagcactccttcaatgatttgagactaagattgtgga 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12950663 aactgtttcttaacgtcaaaagtgtgtagaagccttgtagcactccttcaatgatttgagactaagattgtgga 12950590  T

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Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 299 - 386
Target Start/End: Complemental strand, 12901489 - 12901405
Alignment:
Q  299 gcactttagtggttttgatggaagagactaaaaaagtgatggatgaacagtgaggtaggagtaggttgtgctgattttggtgagtttc 386  Q
    ||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||    
T  12901489 gcactttagtggttt-gatggaagagac-aaaaaagtgatg-atgaacagtgaggtaggagtaggttgtgctggttttggtaagtttc 12901405  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 12901738 - 12901660
Alignment:
Q  20 agtggctactatgatgcaacgacaattaactgctgctctaccagcggtagttagctgtcaatctacaaacggtagttac 98  Q
    ||||||||||||| ||||||||||||||| | |||||| || ||||||| |||| ||| ||||| ||||||||||||||    
T  12901738 agtggctactatgttgcaacgacaattaattactgctccactagcggtaattagttgttaatcttcaaacggtagttac 12901660  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 3761235 - 3761155
Alignment:
Q  153 caaaatatagcagaaaaatttacaaatgtaaacgtgttaaaagatgcattaactgtttcttaacgtcaaaagtgtgtagaa 233  Q
    ||||| |||||||||||||  |||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||    
T  3761235 caaaaaatagcagaaaaatcaacaaatgtaaacgtgttaaaagatgcattacctgtttcttgacgtcaaatgtgtgtagaa 3761155  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 276
Target Start/End: Complemental strand, 31392524 - 31392376
Alignment:
Q  131 tgcgagtatatcacagaaacttcaaaatatagcagaaaaatttacaaatgtaaacgtgttaaaagatgcattaactgtttcttaacgtcaaaagtgtgta 230  Q
    |||||||  |||||| |||||| ||||||  | || ||||| ||||||| | |||| ||||||||||||||||  | ||| |  |||||||| |||||||    
T  31392524 tgcgagttcatcacataaactttaaaatagggaagcaaaatctacaaatcttaacgggttaaaagatgcattacttatttttcgacgtcaaatgtgtgta 31392425  T
Q  231 gaagccttgtagcactc---cttcaatgatttgagactaagattgtgga 276  Q
    ||||| ||||| |||||   ||||||||||||||||| || ||||||||    
T  31392424 gaagctttgtaacactccttcttcaatgatttgagacaaaaattgtgga 31392376  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 299 - 368
Target Start/End: Complemental strand, 31392364 - 31392296
Alignment:
Q  299 gcactttagtggttttgatggaagagactaaaaaagtgatggatgaacagtgaggtaggagtaggttgtg 368  Q
    ||||||||| ||||||||| |||||| | ||||| |||||||||||| ||||||||||||||||||||||    
T  31392364 gcactttaggggttttgatagaagagtc-aaaaaggtgatggatgaatagtgaggtaggagtaggttgtg 31392296  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 272
Target Start/End: Complemental strand, 34221429 - 34221329
Alignment:
Q  175 caaatgtaaacgtgttaaaagatgcattaactgtttcttaacgtcaaaagtgtgtagaagccttgtagcactccttc---aatgatttgagactaagatt 271  Q
    ||||||||||   ||||||||||||||||  ||||| ||||||||||| ||||||||||| ||| || || ||||||   ||||||||||||  ||||||    
T  34221429 caaatgtaaatcggttaaaagatgcattacttgtttattaacgtcaaatgtgtgtagaagtcttctaacaatccttctttaatgatttgagataaagatt 34221330  T
Q  272 g 272  Q
    |    
T  34221329 g 34221329  T

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Target: scaffold0148 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 33989 - 33902
Alignment:
Q  188 gttaaaagatgcattaactgtttcttaacgtcaaaagtgtgtagaagccttgtagcactc---cttcaatgatttgagactaagattg 272  Q
    |||||||||||||||| ||||||||| |||||||| |||||||||| |||| || || ||    |||||||||||||||| |||||||    
T  33989 gttaaaagatgcattacctgtttcttgacgtcaaatgtgtgtagaaaccttttaacaatcattattcaatgatttgagacaaagattg 33902  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 7493785 - 7493691
Alignment:
Q  177 aatgtaaacgtgttaaaagatgcattaactgtttcttaacgtcaaaagtgtgtagaagccttgtagcactccttcaatgatttgagactaagatt 271  Q
    |||||||| ||||||||||||||||||   ||||||| |||| ||| | ||||||||  ||| ||||| | ||| ||||||||||||| ||||||    
T  7493785 aatgtaaatgtgttaaaagatgcattacacgtttcttgacgttaaatgagtgtagaaatcttttagcaattcttaaatgatttgagaccaagatt 7493691  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 27656370 - 27656309
Alignment:
Q  168 aaatttacaaatgtaaacgtgttaaaagatgcattaactgtttcttaacgtcaaaagtgtgt 229  Q
    ||||| |||||||||||||  |||||||||| ||||  |||||||| |||||||| ||||||    
T  27656370 aaattgacaaatgtaaacggtttaaaagatgtattacttgtttcttgacgtcaaatgtgtgt 27656309  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 21138401 - 21138345
Alignment:
Q  188 gttaaaagatgcattaactgtttcttaacgtcaaaagtgtgtagaagccttgtagca 244  Q
    ||||||||||||||||  |||||||| | |||||| |||||||||| |||| |||||    
T  21138401 gttaaaagatgcattacttgtttcttgatgtcaaatgtgtgtagaaaccttctagca 21138345  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 43346931 - 43346855
Alignment:
Q  175 caaatgtaaacgtgttaaaagatgcattaactgtttcttaacgtcaaaagtgtgtagaagccttgtagcactccttc 251  Q
    ||||| |||||||||||||||||||||||  ||||| || ||| ||||  ||||||||| |||| ||||| ||||||    
T  43346931 caaatttaaacgtgttaaaagatgcattacttgtttgttgacgccaaatatgtgtagaaaccttctagcaatccttc 43346855  T

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