View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1051_low_5 (Length: 354)
Name: NF1051_low_5
Description: NF1051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1051_low_5 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 11789298 - 11789613
Alignment:
| Q |
1 |
aagatagcacaagagcatggtcttgttgatgatccaaaagcaactgtaccaatgagtatatggtggttgattcctcaatactttttgtttggtgtttcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
11789298 |
aagatagcacaagagcatggtcttgttgatgatccaaacgcaattgttccaatgagtatatggtggttggttcctcaatactttttgtttggagtttcag |
11789397 |
T |
|
| Q |
101 |
aggtttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattgttggtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11789398 |
aggtttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattattggtgt |
11789497 |
T |
|
| Q |
201 |
tggaagctttctaagtggctttctaatttctttgatagaacattttagtggcaaagatggacatgatagttggttttgtgacaatatcaataaggcacat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11789498 |
tggaagctttctaagtggctttctaatttctttgatagaacattttagtggcaaagatggacatgatagttggttttgtgacaatatcaataagacacat |
11789597 |
T |
|
| Q |
301 |
cttgattacttttatt |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11789598 |
cttgattacttttatt |
11789613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 4 - 316
Target Start/End: Original strand, 11678288 - 11678600
Alignment:
| Q |
4 |
atagcacaagagcatggtcttgttgatgatccaaaagcaactgtaccaatgagtatatggtggttgattcctcaatactttttgtttggtgtttcagagg |
103 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
11678288 |
atagcacaagaatatggtattgttgatgatcctaatgcaactgtaccaatgagtatatggtggttggttcctcaatactttttgtttggagtttcagagg |
11678387 |
T |
|
| Q |
104 |
tttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattgttggtgttgg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11678388 |
tttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattgttggtgttgg |
11678487 |
T |
|
| Q |
204 |
aagctttctaagtggctttctaatttctttgatagaacattttagtggcaaagatggacatgatagttggttttgtgacaatatcaataaggcacatctt |
303 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || |
|
|
| T |
11678488 |
aagctttcttagtggctttctcatttcattgatagaacattttagtggcaaagatggacatgaaacttggttttgtgacaatatcaataaggcacatttt |
11678587 |
T |
|
| Q |
304 |
gattacttttatt |
316 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11678588 |
gattacttttatt |
11678600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 4 - 316
Target Start/End: Original strand, 11686567 - 11686879
Alignment:
| Q |
4 |
atagcacaagagcatggtcttgttgatgatccaaaagcaactgtaccaatgagtatatggtggttgattcctcaatactttttgtttggtgtttcagagg |
103 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
11686567 |
atagcacaagaatatggtattgttgatgatcctaatgcaactgtaccaatgagtatatggtggttggttcctcaatactttttgtttggagtttcagagg |
11686666 |
T |
|
| Q |
104 |
tttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattgttggtgttgg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11686667 |
tttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattgttggtgttgg |
11686766 |
T |
|
| Q |
204 |
aagctttctaagtggctttctaatttctttgatagaacattttagtggcaaagatggacatgatagttggttttgtgacaatatcaataaggcacatctt |
303 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || |
|
|
| T |
11686767 |
aagctttcttagtggctttctcatttcattgatagaacattttagtggcaaagatggacatgaaacttggttttgtgacaatatcaataaggcacatttt |
11686866 |
T |
|
| Q |
304 |
gattacttttatt |
316 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11686867 |
gattacttttatt |
11686879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 5 - 323
Target Start/End: Original strand, 11699474 - 11699792
Alignment:
| Q |
5 |
tagcacaagagcatggtcttgttgatgatccaaaagcaactgtaccaatgagtatatggtggttgattcctcaatactttttgtttggtgtttcagaggt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||| |||||||||||| |||||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
11699474 |
tagcacaagagcatggtcttgttgatgatcctaatgcaactgttccaatgagtatagggtggttgattcctcagtatgttttgtttggtgtttctgaggt |
11699573 |
T |
|
| Q |
105 |
ttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattgttggtgttgga |
204 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11699574 |
ttttaccatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattattggtgttgga |
11699673 |
T |
|
| Q |
205 |
agctttctaagtggctttctaatttctttgatagaacattttagtggcaaagatggacatgatagttggttttgtgacaatatcaataaggcacatcttg |
304 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11699674 |
agctttctaagtggctttctcatttcattgatagaacattttactggcaaagatggtcatgaaagttggttttgtgacaatatcaataaggcacatcttg |
11699773 |
T |
|
| Q |
305 |
attacttttatttgttact |
323 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
11699774 |
attacttttattggttact |
11699792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 4 - 316
Target Start/End: Original strand, 11708926 - 11709238
Alignment:
| Q |
4 |
atagcacaagagcatggtcttgttgatgatccaaaagcaactgtaccaatgagtatatggtggttgattcctcaatactttttgtttggtgtttcagagg |
103 |
Q |
| |
|
||||||||| | ||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||| |
|
|
| T |
11708926 |
atagcacaaaaatatggtcttgttgatgatcctaatgcaactgtaccaatgagtatatggtggttggttcctcaatactttttgtttggagtttctgagg |
11709025 |
T |
|
| Q |
104 |
tttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattgttggtgttgg |
203 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11709026 |
tttttacaatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggactggcactctatttgagtattgttggtgttgg |
11709125 |
T |
|
| Q |
204 |
aagctttctaagtggctttctaatttctttgatagaacattttagtggcaaagatggacatgatagttggttttgtgacaatatcaataaggcacatctt |
303 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || |
|
|
| T |
11709126 |
aagctttctaagtggctttctcatttcattgatagaacattttagtggcaaagatggacatgaaacttggttttgtgacaatatcaataaggcacatttt |
11709225 |
T |
|
| Q |
304 |
gattacttttatt |
316 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11709226 |
gattacttttatt |
11709238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 11801465 - 11801688
Alignment:
| Q |
1 |
aagatagcacaagagcatggtcttgttgatgatccaaaagcaactgtaccaatgagtatatggtggttgattcctcaatactttttgtttggtgtttcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
11801465 |
aagatagcacaagagcatggtcttgttgatgatccaaacgcaattgttccaatgagtatatggtggttggttcctcaatactttttgtttggagtttcag |
11801564 |
T |
|
| Q |
101 |
aggtttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattgttggtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11801565 |
aggtttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattattggtgt |
11801664 |
T |
|
| Q |
201 |
tggaagctttctaagtggctttct |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
11801665 |
tggaagctttctaagtggctttct |
11801688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 11785711 - 11785926
Alignment:
| Q |
1 |
aagatagcacaagagcatggtcttgttgatgatccaaaagcaactgtaccaatgagtatatggtggttgattcctcaatactttttgtttggtgtttcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||| || || | |
|
|
| T |
11785711 |
aagatagcacaagagcatggtcttgttgatgatccaaatgcaactgttccaatgagtatatggtggttggttcctcaatactttttgtttggagtatctg |
11785810 |
T |
|
| Q |
101 |
aggtttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattgttggtgt |
200 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11785811 |
aggtttttactattgttggtgttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattattggtgt |
11785910 |
T |
|
| Q |
201 |
tggaagctttctaagt |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11785911 |
tggaagctttctaagt |
11785926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 122 - 316
Target Start/End: Original strand, 11792726 - 11792920
Alignment:
| Q |
122 |
ttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattgttggtgttggaagctttctaagtggctt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11792726 |
ttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattattggtgttggaagctttctaagtggctt |
11792825 |
T |
|
| Q |
222 |
tctaatttctttgatagaacattttagtggcaaagatggacatgatagttggttttgtgacaatatcaataaggcacatcttgattacttttatt |
316 |
Q |
| |
|
||| ||||| |||||||||||||||| |||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11792826 |
tctcatttcattgatagaacattttactggcaaagatggtcatgaaacttggttttgtgacaatatcaataaggcacatcttgattacttttatt |
11792920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 20713 - 21028
Alignment:
| Q |
1 |
aagatagcacaagagcatggtcttgttgatgatccaaaagcaactgtaccaatgagtatatggtggttgattcctcaatactttttgtttggtgtttcag |
100 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20713 |
aagatagcacaagagcatagtcttgatgatgatccaaatgcaactgtaccaatgagtatatggtggttgattcctcaatactttttgtttggtgtttcag |
20812 |
T |
|
| Q |
101 |
aggtttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattgttggtgt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20813 |
aggtttttaccatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattattggtgt |
20912 |
T |
|
| Q |
201 |
tggaagctttctaagtggctttctaatttctttgatagaacattttagtggcaaagatggacatgatagttggttttgtgacaatatcaataaggcacat |
300 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20913 |
tggaagctttcttagtggatttctaatttctttaatagaacattttagtgccaaagatggtcatgatagttggttttgtgacaatatcaataaggcacat |
21012 |
T |
|
| Q |
301 |
cttgattacttttatt |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
21013 |
cttgattacttttatt |
21028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 47 - 231
Target Start/End: Complemental strand, 4982 - 4798
Alignment:
| Q |
47 |
taccaatgagtatatggtggttgattcctcaatactttttgtttggtgtttcagaggtttttactatggttggtcttcaggaatttttctatgatcaagt |
146 |
Q |
| |
|
|||| ||||| || |||||||||||||||||||| | |||||||| || || || || ||||| ||||| ||||| || ||||||||||||||||| || |
|
|
| T |
4982 |
tacctatgagcatctggtggttgattcctcaatatgtcttgtttggagtatctgatgtctttacaatggtaggtctgcaagaatttttctatgatcaggt |
4883 |
T |
|
| Q |
147 |
cccaaatgaactaagaagcatgggacttgcactctatttgagtattgttggtgttggaagctttctaagtggctttctaatttct |
231 |
Q |
| |
|
||| ||||| ||||||| |||| ||| | |||||||| |||||| |||| ||||| |||||||| ||| ||||||| |||||| |
|
|
| T |
4882 |
cccggatgaattaagaagtgtgggtctttccctctatttaagtatttttggggttgggagctttctgagtagctttctcatttct |
4798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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