View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1051_low_7 (Length: 284)
Name: NF1051_low_7
Description: NF1051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1051_low_7 |
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| [»] chr4 (7 HSPs) |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 26 - 284
Target Start/End: Original strand, 11788964 - 11789222
Alignment:
| Q |
26 |
agcataggcagtcctaagtttgattccaatttgggctacatctttagtttatggtattttctttgctcaaatatttacattcttcaccaagcaagggagt |
125 |
Q |
| |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11788964 |
agcaaaggcagtactaagtttgattccaatttgggctacatctttagtttatggtattatctttgctcaaatatttacattcttcaccaaacaagggagt |
11789063 |
T |
|
| Q |
126 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttctcttggatcgataggtggtgttgctattgttctcttcactcctatctacgacc |
225 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11789064 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttctcttggatcaataggtggtgttgctattgttctcttcactcctatctacgacc |
11789163 |
T |
|
| Q |
226 |
gtttattcgtaccactagcaagagttataactggaaagccctcaggtattacaatgctt |
284 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11789164 |
gtttattcgtgccactagcaagagttataactggaaagtcctcaggtattacaatgctt |
11789222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 26 - 284
Target Start/End: Original strand, 11801131 - 11801389
Alignment:
| Q |
26 |
agcataggcagtcctaagtttgattccaatttgggctacatctttagtttatggtattttctttgctcaaatatttacattcttcaccaagcaagggagt |
125 |
Q |
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|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11801131 |
agcaaaggcagtactaagtttgattccaatttgggctacatctttagtttatggtattatctttgctcaaatatttacattcttcaccaaacaagggagt |
11801230 |
T |
|
| Q |
126 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttctcttggatcgataggtggtgttgctattgttctcttcactcctatctacgacc |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11801231 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttctcttggatcaataggtggtgttgctattgttctcttcactcctatctacgacc |
11801330 |
T |
|
| Q |
226 |
gtttattcgtaccactagcaagagttataactggaaagccctcaggtattacaatgctt |
284 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
11801331 |
gtttattcgtgccactagcaagagttataactggaaagtcctcaggtattacaatgctt |
11801389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 26 - 284
Target Start/End: Original strand, 11785377 - 11785635
Alignment:
| Q |
26 |
agcataggcagtcctaagtttgattccaatttgggctacatctttagtttatggtattttctttgctcaaatatttacattcttcaccaagcaagggagt |
125 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11785377 |
agcaaaggcagtactaaggttgattccaatttgggcttcgactttagtttatggtattatctttgctcaaatatttacattcttcaccaagcaagggagt |
11785476 |
T |
|
| Q |
126 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttctcttggatcgataggtggtgttgctattgttctcttcactcctatctacgacc |
225 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||| ||||||||||||| |
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| T |
11785477 |
tctatggagagaacaatatttcctggtttcaacatacctcccgcttctcttggaatgataggcggtgttgcaattgttctcttcagccctatctacgacc |
11785576 |
T |
|
| Q |
226 |
gtttattcgtaccactagcaagagttataactggaaagccctcaggtattacaatgctt |
284 |
Q |
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|||||||||| ||||||||||| |||||||||||| ||||||||||| ||||||||| |
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| T |
11785577 |
gtttattcgtgccactagcaaggaatataactggaaaaccctcaggtatcacaatgctt |
11785635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 26 - 284
Target Start/End: Original strand, 11699136 - 11699394
Alignment:
| Q |
26 |
agcataggcagtcctaagtttgattccaatttgggctacatctttagtttatggtattttctttgctcaaatatttacattcttcaccaagcaagggagt |
125 |
Q |
| |
|
|||| ||||||| ||||| || |||||||||||||| ||| ||||||||||||| ||| ||||||||||| | ||||| ||||||||||||||||||||| |
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| T |
11699136 |
agcaaaggcagtactaaggttaattccaatttgggcgacaactttagtttatggcattgtctttgctcaagtttttactttcttcaccaagcaagggagt |
11699235 |
T |
|
| Q |
126 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttctcttggatcgataggtggtgttgctattgttctcttcactcctatctacgacc |
225 |
Q |
| |
|
|| |||||||||||||||||||||| ||| |||||||||| ||||||||| | ||||| |||||||| |||||| |||||| | |||||||||| |
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| T |
11699236 |
tcaatggagagaacaatatttcctggcttcgacatacctcctgcttctcttcaaacgataaacggtgttgcaattgttgtcttcagcgcaatctacgacc |
11699335 |
T |
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| Q |
226 |
gtttattcgtaccactagcaagagttataactggaaagccctcaggtattacaatgctt |
284 |
Q |
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| |||| || ||||||||||||| |||||| || || |||||||||| ||||||||| |
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| T |
11699336 |
gcatatttgtgccactagcaagagctataaccggtaaaacctcaggtatcacaatgctt |
11699394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 284
Target Start/End: Original strand, 11677951 - 11678209
Alignment:
| Q |
26 |
agcataggcagtcctaagtttgattccaatttgggctacatctttagtttatggtattttctttgctcaaatatttacattcttcaccaagcaagggagt |
125 |
Q |
| |
|
|||| |||| || ||||| ||| ||||||||||||||||| |||| |||||||||||| ||||||||||| | ||||||||||| ||||||||||||||| |
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| T |
11677951 |
agcaaaggctgtactaaggttggttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattctttaccaagcaagggagt |
11678050 |
T |
|
| Q |
126 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttctcttggatcgataggtggtgttgctattgttctcttcactcctatctacgacc |
225 |
Q |
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||| || ||||||||||||||||||| || |||||||||||||||| ||| |||||| || |||| ||| ||||||||| |||||||| |||| |
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| T |
11678051 |
tctatgcagagaacaatatttcctggatttgacatacctcccgcttcgcttcaatcgattaacgggcttgcaattcttctcttcagccctatctatgacc |
11678150 |
T |
|
| Q |
226 |
gtttattcgtaccactagcaagagttataactggaaagccctcaggtattacaatgctt |
284 |
Q |
| |
|
| ||||||| || |||||||||| ||| || ||||| ||||| || || ||||||||| |
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| T |
11678151 |
gcatattcgtgccgctagcaagagctatcaccggaaaaccctctggcatcacaatgctt |
11678209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 284
Target Start/End: Original strand, 11686230 - 11686488
Alignment:
| Q |
26 |
agcataggcagtcctaagtttgattccaatttgggctacatctttagtttatggtattttctttgctcaaatatttacattcttcaccaagcaagggagt |
125 |
Q |
| |
|
|||| |||| || ||||| ||| ||||||||||||||||| |||| |||||||||||| ||||||||||| | ||||||||||| ||||||||||||||| |
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|
| T |
11686230 |
agcaaaggctgtactaaggttggttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattctttaccaagcaagggagt |
11686329 |
T |
|
| Q |
126 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttctcttggatcgataggtggtgttgctattgttctcttcactcctatctacgacc |
225 |
Q |
| |
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||| || ||||||||||||||||||| || |||||||||||||||| ||| |||||| || |||| ||| ||||||||| |||||||| |||| |
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| T |
11686330 |
tctatgcagagaacaatatttcctggatttgacatacctcccgcttcgcttcaatcgattaacgggcttgcaattcttctcttcagccctatctatgacc |
11686429 |
T |
|
| Q |
226 |
gtttattcgtaccactagcaagagttataactggaaagccctcaggtattacaatgctt |
284 |
Q |
| |
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| ||||||| || |||||||||| ||| || ||||| ||||| || || ||||||||| |
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|
| T |
11686430 |
gcatattcgtgccgctagcaagagctatcaccggaaaaccctctggcatcacaatgctt |
11686488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 284
Target Start/End: Original strand, 11708589 - 11708847
Alignment:
| Q |
26 |
agcataggcagtcctaagtttgattccaatttgggctacatctttagtttatggtattttctttgctcaaatatttacattcttcaccaagcaagggagt |
125 |
Q |
| |
|
|||| |||| || ||||| ||| ||||||||||| || || |||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||| | |
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| T |
11708589 |
agcaaaggctgttctaaggttggttccaatttggacttcaactttggtttatggtattgtctttgctcaagtttttacattcttcaccaagcaagggact |
11708688 |
T |
|
| Q |
126 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttctcttggatcgataggtggtgttgctattgttctcttcactcctatctacgacc |
225 |
Q |
| |
|
|| |||||||||||||||||||||| || ||||||||||| |||| ||| | | ||| | |||| |||||||||||| |||||||| || | |
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| T |
11708689 |
tcaatggagagaacaatatttcctggatttgacatacctccctcttcgcttcaaacaataaaatggcttgcaattgttctcttctgccctatctatgagc |
11708788 |
T |
|
| Q |
226 |
gtttattcgtaccactagcaagagttataactggaaagccctcaggtattacaatgctt |
284 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
11708789 |
acatattcgtgccactagcaagagttataactggaaagccctcaggtatcacaatgctt |
11708847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 26 - 284
Target Start/End: Original strand, 20379 - 20637
Alignment:
| Q |
26 |
agcataggcagtcctaagtttgattccaatttgggctacatctttagtttatggtattttctttgctcaaatatttacattcttcaccaagcaagggagt |
125 |
Q |
| |
|
|||| ||||||| ||||| ||| ||||||||||||||||| |||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||| |
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| T |
20379 |
agcaaaggcagtactaaggttggttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattcttcaccaagcaagggagt |
20478 |
T |
|
| Q |
126 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttctcttggatcgataggtggtgttgctattgttctcttcactcctatctacgacc |
225 |
Q |
| |
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||| || ||||||||||||||||||||||| |||||||||| ||||||||| | ||||| ||| | || |||||||||| ||||||||||||| |
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|
| T |
20479 |
tctatgcagagaacaatatttcctggtttcgacatacctccggcttctcttcaaacgataaccaatgtctccatagttctcttcagccctatctacgacc |
20578 |
T |
|
| Q |
226 |
gtttattcgtaccactagcaagagttataactggaaagccctcaggtattacaatgctt |
284 |
Q |
| |
|
|| |||| || |||||||||||| ||| |||||||| |||||||| || ||| ||||| |
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| T |
20579 |
gtatatttgtgccactagcaagaagtatcactggaaaaccctcaggcatcacattgctt |
20637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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