View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10520_4 (Length: 301)
Name: NF10520_4
Description: NF10520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10520_4 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 298
Target Start/End: Complemental strand, 45198925 - 45198639
Alignment:
| Q |
15 |
agatgttccactatattatctgtcattactaatcataaactcaactatgccattactaaatt---ccaaatatttttctttacctttaatnnnnnnnntc |
111 |
Q |
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| T |
45198925 |
agatgttccactatattatctgtcattactcatcataaactcaactatgccattactaaattattccaaatatttttctttacctttaataaaaaaaatc |
45198826 |
T |
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| Q |
112 |
aaaatattttgaaacaatgaacactcaacaaataaatgtcgagatgattcaaggcagccacaatcatttaatacaataaacatacacatcatttattcaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45198825 |
aaaatattttgaaacaatgaacactcaacaaataaatgtcgagatgattcaaggcagccacaatcatttaatacaataaacatccacatcatttattcaa |
45198726 |
T |
|
| Q |
212 |
cgatgcataagattatccttcatgagaagatattttgcatgaacttccacacaaagagatatcttcaacgaataattttactccatg |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45198725 |
cgatgcataagattatccttcatgagaagatattttgcatgaacttccacacaaagagatatcttcaacgaataattttactccatg |
45198639 |
T |
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