View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10520_low_1 (Length: 415)

Name: NF10520_low_1
Description: NF10520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10520_low_1
NF10520_low_1
[»] chr3 (2 HSPs)
chr3 (15-398)||(25601613-25601996)
chr3 (46-380)||(25596839-25597182)
[»] chr4 (18 HSPs)
chr4 (85-396)||(36643440-36643751)
chr4 (72-396)||(36636745-36637069)
chr4 (72-218)||(55967007-55967153)
chr4 (103-215)||(36613342-36613454)
chr4 (71-215)||(38863134-38863278)
chr4 (103-197)||(35974003-35974097)
chr4 (148-232)||(18364242-18364326)
chr4 (83-195)||(35968285-35968397)
chr4 (148-232)||(36598599-36598683)
chr4 (71-218)||(18083021-18083168)
chr4 (283-386)||(36613165-36613268)
chr4 (71-218)||(36617513-36617660)
chr4 (145-215)||(3978136-3978206)
chr4 (71-197)||(18359158-18359284)
chr4 (71-197)||(36603644-36603770)
chr4 (256-341)||(36668463-36668548)
chr4 (256-364)||(35968458-35968566)
chr4 (329-396)||(36909764-36909831)
[»] chr5 (4 HSPs)
chr5 (104-386)||(19674990-19675272)
chr5 (104-386)||(19658151-19658433)
chr5 (91-177)||(17667110-17667196)
chr5 (133-190)||(25064275-25064332)
[»] chr1 (2 HSPs)
chr1 (74-348)||(42602730-42603004)
chr1 (71-205)||(28928442-28928576)
[»] chr6 (6 HSPs)
chr6 (72-197)||(33844280-33844405)
chr6 (72-197)||(33840288-33840413)
chr6 (71-177)||(7140746-7140852)
chr6 (71-177)||(8680360-8680466)
chr6 (256-294)||(33840185-33840223)
chr6 (256-318)||(33844153-33844215)
[»] chr7 (4 HSPs)
chr7 (133-197)||(32413648-32413712)
chr7 (145-210)||(6844163-6844228)
chr7 (91-176)||(14677153-14677238)
chr7 (145-197)||(44501441-44501493)
[»] chr8 (2 HSPs)
chr8 (104-213)||(35335844-35335953)
chr8 (133-205)||(27701888-27701960)
[»] chr2 (2 HSPs)
chr2 (142-188)||(43864058-43864104)
chr2 (144-205)||(43875208-43875269)


Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 398
Target Start/End: Original strand, 25601613 - 25601996
Alignment:
Q  15 ggacatgtctgattttataaattttttgaataaagcaatacactctgagaacgagcatgaagacagattgagtgatttacccgactgtgttctccttcat 114  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601613 ggacatgtctgattttataaaaaatttgaataaagcaatacactctgagaacgagcatgaagacagattgagtgatttacccgactgtgttctccttcat 25601712  T
Q  115 attttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcatt 214  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601713 attttgtcattttgtaataccaaacatgctgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcatt 25601812  T
Q  215 cctctgaatttcccactataaagagttttgcggcattcatctctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactg 314  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601813 cctctgaatttcccactataaagagttttgcggcattcgtctctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactg 25601912  T
Q  315 tgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattaggagt 398  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601913 tgatggtaacatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattaggagt 25601996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 46 - 380
Target Start/End: Original strand, 25596839 - 25597182
Alignment:
Q  46 aaagcaatacactctgagaacgagcatgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccg 145  Q
    ||||||||||||| ||| || ||| |||||||||||||||| ||||||||||||  |||||| ||||| |||||||||||||  ||||||||  ||||||    
T  25596839 aaagcaatacactgtgaaaatgagaatgaagacagattgagcgatttacccgacaatgttcttcttcacattttgtcatttttgaataccaagtatgccg 25596938  T
Q  146 ttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttttgc 245  Q
    ||||||||||||||||||| || ||||||||| |||||||||||| ||||||||||||||||||||||| |  |||||| ||||||||  ||| |||| |    
T  25596939 ttcaaacttgcattttgtctacgagatggaagaatctttggaaacatattcccacccttatattgcattgccttgaattccccactatggagaattttac 25597038  T
Q  246 ggcattcatctctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttga---------ctgtgatggtaatatccagcctcga 336  Q
      ||| | | ||||||||||| ||||||||||||||| || ||||| || ||||||||||||||||         || |||||||||||||| | ||  |    
T  25597039 ctcatccgtatctaagattttaactcttcgtgatagcacaacttcactgcatgctcttgatcttgaccgtacaccctatgatggtaatatcccgtctgaa 25597138  T
Q  337 ctcctcaaaaagattttaaagtatgtttcctctcataattccca 380  Q
    |||||||||||||| ||| | |||||||| ||||||||||||||    
T  25597139 ctcctcaaaaagatattagactatgtttcttctcataattccca 25597182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 85 - 396
Target Start/End: Complemental strand, 36643751 - 36643440
Alignment:
Q  85 agtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaagtatcttt 184  Q
    ||||| |||||||| |||||| ||||||| ||||| |||||||   |  |||||||||| |||||||| ||  |||||||||||||||||||| ||||||    
T  36643751 agtgacttacccgagtgtgttatccttcacattttatcatttttggactccaaacatgctgttcaaacctgtgttttgtccacaagatggaagcatcttt 36643652  T
Q  185 ggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttttgcggcattcatctctaagattttgactcttcgtgatagctc 284  Q
    ||  ||||||||| ||||||||||| ||||||||  | ||| | ||| | ||||  |||||   |||| | ||||| ||||||||||||||  |||||||    
T  36643651 gggcacgtattcctacccttatattacattcctcaaacttttcaactgtcaagaaatttgccatattcgtgtctaacattttgactcttcgcaatagctc 36643552  T
Q  285 agcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactc 384  Q
    | ||||  || | |||||  |||||||  ||  |||| ||||  | |||| |||||| |||||||||||||| ||| ||| ||| |||||| |||| |||    
T  36643551 aacttctctgcaagctctcaatcttgatcgtcgtggtgatattgaacctcaactccttaaaaagattttaaattatatttgctcccataatacccacctc 36643452  T
Q  385 cacgaattagga 396  Q
    ||||||||||||    
T  36643451 cacgaattagga 36643440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 72 - 396
Target Start/End: Complemental strand, 36637069 - 36636745
Alignment:
Q  72 tgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaaga 171  Q
    |||||||||  ||||||| ||||||||| || |  ||||||| |||||||||||||  |||||||||||||  ||   ||||||  ||||||| |  |||    
T  36637069 tgaagacaggctgagtgacttacccgacggtataatccttcacattttgtcatttttgaataccaaacatgttgtcagaacttgtgttttgtctaagaga 36636970  T
Q  172 tggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttttgcggcattcatctctaagattttgactc 271  Q
    ||||   |||| |||||||||||||| || ||||| ||| || | ||   |||| ||||| | |||   |||||    ||  | ||||| || |||||||    
T  36636969 tggagacatctctggaaacgtattccaactcttatgttgtatgcatcaagattttccactgttaagcaatttgccatgtttgtgtctaacatattgactc 36636870  T
Q  272 ttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctca 371  Q
    ||||||||| |||| || || || | ||||||||||||||| || ||||||| ||  |||||| |||||| |||||||||||||| ||||||||||| ||    
T  36636869 ttcgtgatacctcaactgcactgcacgctcttgatcttgaccgtcatggtaacattgagcctcaactccttaaaaagattttaaactatgtttcctccca 36636770  T
Q  372 taattcccaactccacgaattagga 396  Q
    |||| |||| ||||| || ||||||    
T  36636769 taatacccacctccaggatttagga 36636745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 55967153 - 55967007
Alignment:
Q  72 tgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaaga 171  Q
    |||||||||||  ||||| ||||||||| ||||||||||||| ||||| |||||||  || ||||| |||| | ||  ||||||  ||||||||||||||    
T  55967153 tgaagacagataaagtgacttacccgacagtgttctccttcacattttatcatttttgaagaccaagcatgtcattagaacttgtgttttgtccacaaga 55967054  T
Q  172 tggaagtatctttggaaacgtattcccacccttatattgcattcctc 218  Q
    ||||  ||||| ||||||| | ||||  ||||||| |||||||||||    
T  55967053 tggagatatctctggaaacatgttccagcccttattttgcattcctc 55967007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 215
Target Start/End: Complemental strand, 36613454 - 36613342
Alignment:
Q  103 gttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccaccc 202  Q
    ||||||||||| |||||||||||||   |  ||| | |||||| |||||||||  ||||||||||||| ||||||||||||||||||| |||||| || |    
T  36613454 gttctccttcacattttgtcatttttggacgccacatatgccgatcaaacttgtgttttgtccacaaggtggaagtatctttggaaacttattccaactc 36613355  T
Q  203 ttatattgcattc 215  Q
    |||  ||||||||    
T  36613354 ttaatttgcattc 36613342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 38863278 - 38863134
Alignment:
Q  71 atgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaag 170  Q
    ||||||||||   |||||| ||||||||| || |||||||| | ||||||||||  |  ||||||||||||||| ||| ||||||  |||||||||  ||    
T  38863278 atgaagacaggccgagtgacttacccgacggtattctcctttacattttgtcatcgttgaataccaaacatgccattcgaacttgtgttttgtccaagag 38863179  T
Q  171 atggaagtatctttggaaacgtattcccacccttatattgcattc 215  Q
    ||||||  |||| | ||||||||||||  | ||||||||||||||    
T  38863178 atggaaacatctctcgaaacgtattccatctcttatattgcattc 38863134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 35974003 - 35974097
Alignment:
Q  103 gttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcc 197  Q
    ||||||||||| ||||||||||| |   |||| ||||| |||||||||| ||| |||||||||||||||||||   |||| ||||||||||||||    
T  35974003 gttctccttcacattttgtcattgttcgatacaaaacaggccgttcaaagttgtattttgtccacaagatggagacatctctggaaacgtattcc 35974097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 18364242 - 18364326
Alignment:
Q  148 caaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccacta 232  Q
    ||||||| ||||||||| |||||||||||  ||||||||||||| ||||| || ||||| ||||||||||| || ||| ||||||    
T  18364242 caaacttccattttgtctacaagatggaaacatctttggaaacgcattccaactcttatgttgcattcctcagacttttccacta 18364326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 35968285 - 35968397
Alignment:
Q  83 tgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaagtatct 182  Q
    ||||||| ||| ||||| | ||||||||||| ||||||||||| |   |||| ||||| | ||||||||||||| ||||||||| ||||||| |  ||||    
T  35968285 tgagtgagttagccgacggagttctccttcacattttgtcattattggatacaaaacaggtcgttcaaacttgcgttttgtccaaaagatgggaacatct 35968384  T
Q  183 ttggaaacgtatt 195  Q
     ||||||||||||    
T  35968385 ctggaaacgtatt 35968397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 36598683 - 36598599
Alignment:
Q  148 caaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccacta 232  Q
    ||||||| ||||||||| |||||||||||  ||||||||||||| ||||| || ||||| ||||||||||| || ||| ||||||    
T  36598683 caaacttccattttgtctacaagatggaaacatctttggaaacgcattccaactcttatgttgcattcctcagacttttccacta 36598599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 218
Target Start/End: Original strand, 18083021 - 18083168
Alignment:
Q  71 atgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaag 170  Q
    ||||||| || |||||||| |||||  || ||||| |||||  ||||||||||||||  || |||||| |||  |||| ||||||| ||||||| | |||    
T  18083021 atgaagataggttgagtgacttacctaacagtgttatcctttgtattttgtcatttttaaacaccaaagatggtgttcgaacttgcgttttgtctagaag 18083120  T
Q  171 atggaagtatctttggaaacgtattcccacccttatattgcattcctc 218  Q
    ||||||  || | ||||||| |||||| || ||| ||||| |||||||    
T  18083121 atggaaagatatatggaaacatattcctactcttgtattggattcctc 18083168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 386
Target Start/End: Complemental strand, 36613268 - 36613165
Alignment:
Q  283 tcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaac 382  Q
    |||||| ||||| |||| |||||| ||||||||   ||||||||  |||||||| |||| ||||||||||| || |||||||||||  ||||| |||| |    
T  36613268 tcagctgcattggatgcccttgattttgactgtagaggtaatattgagcctcgaatccttaaaaagattttgaattatgtttcctcagataatacccacc 36613169  T
Q  383 tcca 386  Q
    ||||    
T  36613168 tcca 36613165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 218
Target Start/End: Complemental strand, 36617660 - 36617513
Alignment:
Q  71 atgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaag 170  Q
    ||||||| || |||||||| |||||  || ||||| |||||  ||||||||||||||  || |||||| |||  |||| ||||||| ||||||| | |||    
T  36617660 atgaagataggttgagtgacttacctaacagtgttatcctttgtattttgtcatttttaaacaccaaagatggtgttcgaacttgcgttttgtctagaag 36617561  T
Q  171 atggaagtatctttggaaacgtattcccacccttatattgcattcctc 218  Q
    ||||||  || | ||||||| |||||| || ||| ||||| |||||||    
T  36617560 atggaaagatatatggaaacatattcctactcttgtattggattcctc 36617513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 3978136 - 3978206
Alignment:
Q  145 gttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattc 215  Q
    |||||||||||| |||| ||||||||||  ||| |||||||||||||| |||| || |||| |||||||||    
T  3978136 gttcaaacttgcgttttatccacaagatataaggatctttggaaacgtcttcctactcttacattgcattc 3978206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 18359158 - 18359284
Alignment:
Q  71 atgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaag 170  Q
    ||||||||||  ||||||| || || || |||||||| ||||| ||||||||| | |   || ||||||||   |||| |||| |||||||||||| |||    
T  18359158 atgaagacaggctgagtgacttgcctgattgtgttcttcttcacattttgtcaatgttggattccaaacatcgagttcgaactggcattttgtccaaaag 18359257  T
Q  171 atggaagtatctttggaaacgtattcc 197  Q
     |||||| |||||||||||| ||||||    
T  18359258 gtggaagcatctttggaaacatattcc 18359284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 36603770 - 36603644
Alignment:
Q  71 atgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaag 170  Q
    ||||||||||  ||||||| || || || |||||||| ||||| ||||||||| | |   || ||||||||   |||| |||| |||||||||||| |||    
T  36603770 atgaagacaggctgagtgacttgcctgattgtgttcttcttcacattttgtcaatgttggattccaaacatcgagttcgaactggcattttgtccaaaag 36603671  T
Q  171 atggaagtatctttggaaacgtattcc 197  Q
     |||||| |||||||||||| ||||||    
T  36603670 gtggaagcatctttggaaacatattcc 36603644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 36668548 - 36668463
Alignment:
Q  256 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcct 341  Q
    |||||||||||||||||||||||||||||| || |||||   | ||||||| ||||| || |||||||| |  | |||||||||||    
T  36668548 tctaagattttgactcttcgtgatagctcaactgcattgcgcgttcttgatgttgaccgtaatggtaattttgaacctcgactcct 36668463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 364
Target Start/End: Original strand, 35968458 - 35968566
Alignment:
Q  256 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaa 355  Q
    ||||||||||||||||||||||||| ||||  | || || | ||||||||| ||||| || ||||||||||  || ||| ||||||  ||||| |||||     
T  35968458 tctaagattttgactcttcgtgatacctcaattccactgcaagctcttgatattgaccgtcatggtaatattgagtctcaactccttgaaaaggttttag 35968557  T
Q  356 agtatgttt 364  Q
    | |||||||    
T  35968558 actatgttt 35968566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 396
Target Start/End: Original strand, 36909764 - 36909831
Alignment:
Q  329 agcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattagga 396  Q
    |||||| |||||| |||||||||||||| |||||| | || |||||| |||| ||||| |||||||||    
T  36909764 agcctcaactccttaaaaagattttaaactatgttacttcccataatacccacctccatgaattagga 36909831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 104 - 386
Target Start/End: Complemental strand, 19675272 - 19674990
Alignment:
Q  104 ttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccaccct 203  Q
    |||||||||| |||||||||||||   |  | ||| ||||||||||||||||  |||||||||| ||||||| | |||| ||||||| |||||| || ||    
T  19675272 ttctccttcacattttgtcatttttggacgcaaaatatgccgttcaaacttgtgttttgtccacgagatggaggaatctctggaaacttattccaactct 19675173  T
Q  204 tatattgcattcctctgaatttcccactataaagagttttgcggcattcatctctaagattttgactcttcgtgatagctcagcttcattgaatgctctt 303  Q
    ||| |||||||| ||  ||||| ||||| | |||   ||| ||  |||| |  |||||||||||||||||||||||| ||||  ||||||| | || |||    
T  19675172 tattttgcattcttccaaattttccactctgaagcaattttcgaaattcgtgcctaagattttgactcttcgtgatacctcaatttcattgcacgccctt 19675073  T
Q  304 gatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactcca 386  Q
    ||||||||| || ||||| ||||  |||||||| |||| |||||||||||| | ||||||| ||| |||||| |||| |||||    
T  19675072 gatcttgaccgtcatggtcatattgagcctcgaatccttaaaaagattttagattatgtttgctcacataatacccacctcca 19674990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 104 - 386
Target Start/End: Complemental strand, 19658433 - 19658151
Alignment:
Q  104 ttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccaccct 203  Q
    |||||||||| |||||||||||||   |  | ||| ||||||||||||||||  |||||||||| ||||||| | |||| ||||||| |||||| || ||    
T  19658433 ttctccttcacattttgtcatttttggacgcaaaatatgccgttcaaacttgtgttttgtccacgagatggaggaatctctggaaacttattccaactct 19658334  T
Q  204 tatattgcattcctctgaatttcccactataaagagttttgcggcattcatctctaagattttgactcttcgtgatagctcagcttcattgaatgctctt 303  Q
    ||| |||||||| ||  ||||| ||||| | |||   ||| |   |||| |  |||||||||||||||||||||||| ||||  ||||||| | || |||    
T  19658333 tattttgcattcttccaaattttccactctgaagcaattttccaaattcgtgcctaagattttgactcttcgtgatacctcaatttcattgcacgccctt 19658234  T
Q  304 gatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactcca 386  Q
    ||||||||| || ||||| ||||  |||||||| |||| |||||||||||| | ||||||| ||| |||||| |||| |||||    
T  19658233 gatcttgaccgtcatggtcatattgagcctcgaatccttaaaaagattttagattatgtttgctcacataatacccacctcca 19658151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 17667196 - 17667110
Alignment:
Q  91 ttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaag 177  Q
    ||||||||| ||||| |||||||||||||||||||||  || |||||| | |  |||| ||||||| ||||||| ||||||||||||    
T  17667196 ttacccgacagtgttatccttcatattttgtcatttttaaacaccaaagaagttgttcgaacttgcgttttgtctacaagatggaag 17667110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 25064275 - 25064332
Alignment:
Q  133 accaaacatgccgttcaaacttgcattttgtccacaagatggaagtatctttggaaac 190  Q
    ||||||||||| || ||||| ||||| |||||| ||||||||||  ||||||||||||    
T  25064275 accaaacatgcagtccaaacatgcatattgtccccaagatggaacaatctttggaaac 25064332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 74 - 348
Target Start/End: Complemental strand, 42603004 - 42602730
Alignment:
Q  74 aagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatg 173  Q
    |||||||  ||||||| ||||| |||||| || ||||||| ||||||||||||  |||  |||||||  |||||||||||||||| ||||||| ||||||    
T  42603004 aagacaggctgagtgacttacctgactgtcttatccttcacattttgtcatttcttaactccaaacacaccgttcaaacttgcatcttgtccaaaagatg 42602905  T
Q  174 gaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttttgcggcattcatctctaagattttgactctt 273  Q
    ||||  | | |||||||||||||| || ||||||||| |||||||  | ||||||||| | |||  |||| |   |||  | ||||||||||||||||||    
T  42602904 gaagcttatgtggaaacgtattcctactcttatattggattcctcaaactttcccactgtgaagcatttttccatatttgtgtctaagattttgactctt 42602805  T
Q  274 cgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaag 348  Q
    ||||||| |||| || || || |||||||||||||| || || |||||| |||  |||| | |||||| ||||||    
T  42602804 cgtgatacctcaactgcactgcatgctcttgatcttcaccgtcatggtagtattgagccgcaactccttaaaaag 42602730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 205
Target Start/End: Complemental strand, 28928576 - 28928442
Alignment:
Q  71 atgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaag 170  Q
    |||||||||  || |||||||| || ||||||||||| ||||| || || || ||||  ||  ||||| | || ||||||||||||||  | |||||  |    
T  28928576 atgaagacatgttcagtgatttcccggactgtgttctacttcacatattatcttttttaaaagccaaagaagctgttcaaacttgcatactctccactcg 28928477  T
Q  171 atggaagtatctttggaaacgtattcccaccctta 205  Q
    ||||||| |||| ||||| ||| ||||||||||||    
T  28928476 atggaagaatctctggaagcgtcttcccaccctta 28928442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 33844405 - 33844280
Alignment:
Q  72 tgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaaga 171  Q
    |||||| ||| | ||||| |||||||||||  ||||  || | |||||||||||||  || ||| || | |||||||||||||||||||||||||| |||    
T  33844405 tgaagatagactaagtgacttacccgactgcattcttatttacattttgtcatttttgaaaaccgaaaacgccgttcaaacttgcattttgtccaccaga 33844306  T
Q  172 tggaagtatctttggaaacgtattcc 197  Q
    |||||  |||| ||||||||||||||    
T  33844305 tggaaacatctctggaaacgtattcc 33844280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 33840413 - 33840288
Alignment:
Q  72 tgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaaga 171  Q
    |||||||||| | ||||| |||||||||||  ||||  || | |||||||||||||  |  | | || | || |||| |||||||||||||||||| |||    
T  33840413 tgaagacagactaagtgacttacccgactgccttcttgtttacattttgtcatttttgagaatcgaatacgctgttcgaacttgcattttgtccaccaga 33840314  T
Q  172 tggaagtatctttggaaacgtattcc 197  Q
    |||||  |||||||||||||||||||    
T  33840313 tggaaacatctttggaaacgtattcc 33840288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 7140852 - 7140746
Alignment:
Q  71 atgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaag 170  Q
    |||||||||  || ||||||||||||||||||||| | ||||| ||  | || ||||  ||||| ||| | || ||||||||||| |||||||||| |||    
T  7140852 atgaagacaagttaagtgatttacccgactgtgttttacttcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtccaaaag 7140753  T
Q  171 atggaag 177  Q
    |||||||    
T  7140752 atggaag 7140746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 8680466 - 8680360
Alignment:
Q  71 atgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaag 170  Q
    |||||||||  || ||||||||| ||||||||||| | ||||| ||  | || ||||  ||||| ||| | || ||||||||||| |||||||||| |||    
T  8680466 atgaagacaagttaagtgatttagccgactgtgttttacttcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtccaaaag 8680367  T
Q  171 atggaag 177  Q
    |||||||    
T  8680366 atggaag 8680360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 33840223 - 33840185
Alignment:
Q  256 tctaagattttgactcttcgtgatagctcagcttcattg 294  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  33840223 tctaagattttgactcttcgtgataactcagctgcattg 33840185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 33844215 - 33844153
Alignment:
Q  256 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgat 318  Q
    ||||||||||||||||||||||||| ||||||| || || ||  ||||||| |||| ||||||    
T  33844215 tctaagattttgactcttcgtgataactcagctgcactgcatattcttgattttgagtgtgat 33844153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 32413648 - 32413712
Alignment:
Q  133 accaaacatgccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcc 197  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||    
T  32413648 accaaacacgccgttcaaacttgcattttgtccacaagatggaagaatctctggaagcgtcttcc 32413712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 6844163 - 6844228
Alignment:
Q  145 gttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattg 210  Q
    ||||||||||||||| | |||| |||||||||  |||||||||||| | ||||||| |||||||||    
T  6844163 gttcaaacttgcattctatccaaaagatggaacaatctttggaaacatcttcccactcttatattg 6844228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 14677153 - 14677238
Alignment:
Q  91 ttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaa 176  Q
    |||||| || ||||| |||||||||||||||||||||  || |||||| | |  |||| ||||||| ||||||| |||||||||||    
T  14677153 ttacccaacagtgttatccttcatattttgtcatttttaaacaccaaagaagttgttcgaacttgcgttttgtctacaagatggaa 14677238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 44501493 - 44501441
Alignment:
Q  145 gttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcc 197  Q
    ||||| ||||||||||||||| | ||||||||| |||||||||||||| ||||    
T  44501493 gttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 44501441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 213
Target Start/End: Original strand, 35335844 - 35335953
Alignment:
Q  104 ttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccaccct 203  Q
    |||| ||||| ||||||||||| |   || ||||||| |  |||||||||||| ||||||||| |||||||||  |||| |||||||||||||| || ||    
T  35335844 ttctacttcacattttgtcattattacattccaaacaagttgttcaaacttgcgttttgtccaaaagatggaaacatctatggaaacgtattccaacact 35335943  T
Q  204 tatattgcat 213  Q
    ||||||||||    
T  35335944 tatattgcat 35335953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 27701960 - 27701888
Alignment:
Q  133 accaaacatgccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccaccctta 205  Q
    |||||||||||||||||||||  |||| | ||||||||||||||  |||| ||||||||| |||| |||||||    
T  27701960 accaaacatgccgttcaaactaccattctttccacaagatggaacaatctctggaaacgtcttccaaccctta 27701888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 43864104 - 43864058
Alignment:
Q  142 gccgttcaaacttgcattttgtccacaagatggaagtatctttggaa 188  Q
    ||||||||||||||||||||||||| ||||||||   ||||||||||    
T  43864104 gccgttcaaacttgcattttgtccaaaagatggatcaatctttggaa 43864058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 43875269 - 43875208
Alignment:
Q  144 cgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccaccctta 205  Q
    ||||||||||||||||||||||| ||||||||   ||||||||||  || ||||||| ||||    
T  43875269 cgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactctta 43875208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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