View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10520_low_5 (Length: 233)

Name: NF10520_low_5
Description: NF10520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10520_low_5
NF10520_low_5
[»] chr3 (2 HSPs)
chr3 (13-223)||(53573215-53573427)
chr3 (13-223)||(52053604-52053817)
[»] chr2 (1 HSPs)
chr2 (13-223)||(30198360-30198572)
[»] scaffold0002 (1 HSPs)
scaffold0002 (13-223)||(464195-464408)
[»] chr5 (1 HSPs)
chr5 (13-223)||(35898512-35898725)
[»] chr1 (2 HSPs)
chr1 (13-223)||(31356051-31356264)
chr1 (13-223)||(16993337-16993554)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 53573427 - 53573215
Alignment:
Q  13 gtaccagagacttgaattgaggctcatagttgtatcaagatgttgaagaacttatgatacaaattcagtgttgacatgagnnnnnnnnn--attagctgc 110  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||           |||||||||    
T  53573427 gtaccagagacttgaattgaggcccatagttgtatcgagatgttgaagagcttatgatacaaattcagtgttgacatgagtttttttttttattagctgc 53573328  T
Q  111 tatttttgattagttattaaagagttatcatgaatttttaattaggtgttgctttacataagccccttttacaattattgtactatttctttgttgtttg 210  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53573327 tatttttgattagttatttaagtgttatcatgaatttttaattaggtgttgctttacataagccccttttacaattattgtactatttctttgttgtttg 53573228  T
Q  211 attaggtgatgtc 223  Q
    |||||||| ||||    
T  53573227 attaggtgctgtc 53573215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 52053817 - 52053604
Alignment:
Q  13 gtaccagagacttgaattgaggctcatagttgtatcaagatgttgaagaacttatgatacaaattcagtgttgacatgagnnnnnnnnn---attagctg 109  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||            ||||||||    
T  52053817 gtaccagagacttgaattgaggcccatagttgtatcgagatgttgaagagcttatgatacaaattcagtgttgacatgagttttttttttttattagctg 52053718  T
Q  110 ctatttttgattagttattaaagagttatcatgaatttttaattaggtgttgctttacataagccccttttacaattattgtactatttctttgttgttt 209  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52053717 ctatttttgattagttatttaagtgttatcatgaatttttaattaggtgttgctttacataagccccttttacaattattgtactatttctttgttgttt 52053618  T
Q  210 gattaggtgatgtc 223  Q
    ||||||||| ||||    
T  52053617 gattaggtgctgtc 52053604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 30198572 - 30198360
Alignment:
Q  13 gtaccagagacttgaattgaggctcatagttgtatcaagatgttgaagaacttatgatacaaattcagtgttgacatgagnnnnnnnnn--attagctgc 110  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||           |||||||||    
T  30198572 gtaccagagacttgaattgaggcccatagttgtatcgagatgttgaagagcttatgatacaaattcagtgttgacatgagtttttttttttattagctgc 30198473  T
Q  111 tatttttgattagttattaaagagttatcatgaatttttaattaggtgttgctttacataagccccttttacaattattgtactatttctttgttgtttg 210  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30198472 tatttttgattagttatttaagtgttatcatgaatttttaattaggtgttgctttacataagccccttttacaattattgtactatttctttgttgtttg 30198373  T
Q  211 attaggtgatgtc 223  Q
    |||||||| ||||    
T  30198372 attaggtgctgtc 30198360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 464408 - 464195
Alignment:
Q  13 gtaccagagacttgaattgaggctcatagttgtatcaagatgttgaagaacttatgatacaaattcagtgttgacatgagnnnnnnnnn---attagctg 109  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||            ||||||||    
T  464408 gtaccagagacttgaattgaggcccatagttgtatcgagatgttgaagagcttatgatacaaattcagtgttgacatgagttttttttttttattagctg 464309  T
Q  110 ctatttttgattagttattaaagagttatcatgaatttttaattaggtgttgctttacataagccccttttacaattattgtactatttctttgttgttt 209  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  464308 ctatttttgattagttatttaagtgttatcatgaatttttaattaggtgttgctttacataagccccttttacaattattgtactatttctttgttgttt 464209  T
Q  210 gattaggtgatgtc 223  Q
    ||||||||| ||||    
T  464208 gattaggtgctgtc 464195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 35898512 - 35898725
Alignment:
Q  13 gtaccagagacttgaattgaggctcatagttgtatcaagatgttgaagaacttatgatacaaattcagtgttgacatgagnnnnnnnnn---attagctg 109  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||            ||||||||    
T  35898512 gtaccagagacttgaattgaggcccatagttgtatcgagatgttgaagagcttatgatacaaattcagtgttgacatgagttttttttttttattagctg 35898611  T
Q  110 ctatttttgattagttattaaagagttatcatgaatttttaattaggtgttgctttacataagccccttttacaattattgtactatttctttgttgttt 209  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35898612 ctatttttgattagttatttaagtgttatcatgaatttttaattaggtgttgctttacataagccccttttacaattattgtactatttctttgttgttt 35898711  T
Q  210 gattaggtgatgtc 223  Q
    ||||||||| ||||    
T  35898712 gattaggtgctgtc 35898725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 31356051 - 31356264
Alignment:
Q  13 gtaccagagacttgaattgaggctcatagttgtatcaagatgttgaagaacttatgatacaaattcagtgttgacatgagnnnnnnnnn---attagctg 109  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||            ||||||||    
T  31356051 gtaccagagacttgaattgaggcccatagttgtatcgagatgttgaagagcttatgatacaaattcagtgttgacatgagttttttttttttattagctg 31356150  T
Q  110 ctatttttgattagttattaaagagttatcatgaatttttaattaggtgttgctttacataagccccttttacaattattgtactatttctttgttgttt 209  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31356151 ctatttttgattagttatttaagtgttatcatgaatttttaattaggtgttgctttacataagccccttttacaattattgtactatttctttgttgttt 31356250  T
Q  210 gattaggtgatgtc 223  Q
    ||||||||| ||||    
T  31356251 gattaggtgctgtc 31356264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 16993337 - 16993554
Alignment:
Q  13 gtaccagagacttgaattgaggctcatagttgtatcaagatgttgaagaacttatgatacaaattcagtgttgacatgagnnnnnnnnn-------atta 105  Q
    |||||| |||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||                ||||    
T  16993337 gtaccaaagacttgaattgaggcccatagttgtatcgagatgttgaagagcttatgatacaaattcagtgttgacatgagttttttttttttttttatta 16993436  T
Q  106 gctgctatttttgattagttattaaagagttatcatgaatttttaattaggtgttgctttacataagccccttttacaattattgtactatttctttgtt 205  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16993437 gctgctatttttgattagttatttaagtgttatcatgaatttttaattaggtgttgctttacataagccccttttacaattattgtactatttctttgtt 16993536  T
Q  206 gtttgattaggtgatgtc 223  Q
    ||||||||||||| ||||    
T  16993537 gtttgattaggtgctgtc 16993554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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