View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10520_low_6 (Length: 231)
Name: NF10520_low_6
Description: NF10520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10520_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 31306339 - 31306549
Alignment:
| Q |
10 |
gtagcagagacatattctcttgaacacaagggggaaagcaacctctttgaccatttatttgagcttttaaactcttccggtgacaatgatgaaagtttcc |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31306339 |
gtagcacagacatattctcttgaacacaagggggaaagcaacctctttgaccatttatttgagcttttaaactcttccggtgacaatgatgaaagtttcc |
31306438 |
T |
|
| Q |
110 |
gaagggagttagcatcctgcacaggagctctgcagacatctgttagccaacacatggctaaggagcagcagcaagtaagtttattcaatatatctttcct |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31306439 |
gaagggagttagcatcctgcacaggagctctgcagacatctgttagccaacacatggctaaggagcagcagcaagtaagtttattcaatatatctttcct |
31306538 |
T |
|
| Q |
210 |
tgatgtccatc |
220 |
Q |
| |
|
|||| |||||| |
|
|
| T |
31306539 |
tgatttccatc |
31306549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 173
Target Start/End: Original strand, 43982639 - 43982790
Alignment:
| Q |
22 |
tattctcttgaacacaagggggaaagcaacctctttgaccatttatttgagcttttaaactcttccggtgacaatgatgaaagtttccgaagggagttag |
121 |
Q |
| |
|
||||||||||| |||||||| |||||||| || ||||| ||| |||||||||| ||||| |||||| | |||||||| |||| | ||| || || | |
|
|
| T |
43982639 |
tattctcttgagcacaagggtgaaagcaatctttttgatcatctatttgagctcttaaattcttccaccaagaatgatgagggttttccaagagaattgg |
43982738 |
T |
|
| Q |
122 |
catcctgcacaggagctctgcagacatctgttagccaacacatggctaagga |
173 |
Q |
| |
|
|||| |||||||||||| | |||||||| ||||| |||||| |||| ||||| |
|
|
| T |
43982739 |
catcttgcacaggagctttacagacatcagttagtcaacacctggcaaagga |
43982790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University