View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_high_3 (Length: 370)
Name: NF10521_high_3
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 23861676 - 23861324
Alignment:
| Q |
1 |
cctttttagtgtctaaaggttctttaatcaattggggattattatgtaagttgttgtccttcacaagcttttgttgccaagcttttttcacacgctcgtt |
100 |
Q |
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| T |
23861676 |
cctttttagtgtctaaaggttctttaatcaattggggattattatgtaagttgttgtccttcacaagcttttgttgccaagcttttttcacacgctcgtt |
23861577 |
T |
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| Q |
101 |
cttacctatatcaacatgttttggttgnnnnnnnnnn-gttcttcccctcatcaaccagagttggttcaataatattatcgtaaatcttgatgcactggt |
199 |
Q |
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| T |
23861576 |
cttacctatatcaacatgttttggttgtttttttttttgttcttcccctcatcaaccagagttggttcaataatattatcgtaaatcttgatgcactagt |
23861477 |
T |
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| Q |
200 |
gtattgaatgacttttgattttatatctttcacagaaagatgccattctctcatacaccacttcaacgtaaaacgcaaaaccatcatgtccagcagaata |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23861476 |
gtattgaatgacttttgattttatatctttcacagaaagatgccattctctcatacaccacttcaacgtaaaacgcaaaaccatcatgtccagcagaata |
23861377 |
T |
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| Q |
300 |
tcttcaaagatacactctagaagatcgaaatccatcaatatacatgcataata |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23861376 |
tcttcaaagatacactctagaagatcgaaatccatcaatatacatgcataata |
23861324 |
T |
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