View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_high_4 (Length: 362)
Name: NF10521_high_4
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 43062689 - 43062883
Alignment:
| Q |
11 |
catagggactttctttcactcctatatttattagtttacctttttgaaggaatcgtaattgaatcatgttatgatactgatcatagattcatagggactt |
110 |
Q |
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| T |
43062689 |
catagggactttctttcactcctatatttattagtttacctttttgaaggaatcgtaattgaatcatgttatgatactgatcatagattcatagggactt |
43062788 |
T |
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| Q |
111 |
tctgagaaaaatgcactgtccattttggattgaactggtagtgctgttttattttcgaccaatttgattgatgttctcattagccaattcctcaa |
205 |
Q |
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| T |
43062789 |
tctgagaaaaatgcactgtccattttggattgaactggtagtgctgttttattttcgaccaatttgattgatgttctcattagccaattcctcaa |
43062883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 233 - 346
Target Start/End: Original strand, 43062886 - 43062999
Alignment:
| Q |
233 |
aaaccgcatggtgaattatctgaagctatgtttcacagatatgaattgtggaccaatagtcatcatgttttcactattccttctgttaacgttcacatgc |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || | |||| |
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| T |
43062886 |
aaaccgcatggtgaattatctgaagctatgtttcacagatatgaattgtggaccaataatcatcatgttttcactattccttctgttaatgtagatatgc |
43062985 |
T |
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| Q |
333 |
aaagatattagata |
346 |
Q |
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| T |
43062986 |
aaagatattggata |
43062999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 40179145 - 40179058
Alignment:
| Q |
119 |
aaatgcactgtccattttggattgaactggtagtgctgttttattttcgaccaatttgattgatgttctcattagccaattcctcaaaa |
207 |
Q |
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| T |
40179145 |
aaatgcactttccattttggattgaactggtagtcctattttattct-gtccaatttgattgatgttctcattagccaattccacaaaa |
40179058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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