View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10521_high_7 (Length: 266)

Name: NF10521_high_7
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10521_high_7
NF10521_high_7
[»] chr1 (3 HSPs)
chr1 (1-102)||(5909243-5909344)
chr1 (181-257)||(5909088-5909164)
chr1 (204-257)||(5912958-5913011)
[»] chr4 (1 HSPs)
chr4 (1-74)||(35005427-35005500)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 5909344 - 5909243
Alignment:
Q  1 aaactctcatcatcttaattcatatctatcactcgtcattagattacttaacaaacaagaaacattgcaagctgggctaacaactttcaaatttcttgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5909344 aaactctcatcatcttaattcatatctatcactcgtcattagattacttaacaaacaagaaacattgcaagctgggctaacaactttcaaatttcttgca 5909245  T
Q  101 tt 102  Q
    ||    
T  5909244 tt 5909243  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 5909164 - 5909088
Alignment:
Q  181 gagttgatttttacagggatagacaaaatggaacaaaatgtaagaagcaaaacaagaacaaaacatgaagcctatgc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5909164 gagttgatttttacagggatagacaaaatggaacaaaatgtaagaagcaaaacaagagcaaaacatgaagcctatgc 5909088  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 5913011 - 5912958
Alignment:
Q  204 caaaatggaacaaaatgtaagaagcaaaacaagaacaaaacatgaagcctatgc 257  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  5913011 caaaatggaacaaaacgtaagaagcaaaacaagagcaaaacatgaagcctatgc 5912958  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 35005500 - 35005427
Alignment:
Q  1 aaactctcatcatcttaattcatatctatcactcgtcattagattacttaacaaacaagaaacattgcaagctg 74  Q
    ||||||||||||  ||||||||| |||||||||| | ||||||||||||||||||||||||||||| |||||||    
T  35005500 aaactctcatcaagttaattcatttctatcactcatgattagattacttaacaaacaagaaacattacaagctg 35005427  T

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