View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_1 (Length: 455)
Name: NF10521_low_1
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_1 |
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| [»] scaffold0466 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 22 - 446
Target Start/End: Complemental strand, 34646360 - 34645936
Alignment:
| Q |
22 |
atttaagtacctaaatcaaagatggcaaagccatggtgcaccattgtagcaagctttgagacgtttttccatgtcgtttcagatattcaataagaacacc |
121 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34646360 |
atttaagtacctaaatcaaagattgcaaagccatggtgcaccattgtagcaagctttgagacgtttttccatgtcgtttcagatattcaataagaacatc |
34646261 |
T |
|
| Q |
122 |
catttctcgatattaatgtagtggtgatgagattatttctcccatctttgatacttaaagcttccaggtgaatacgatacccttattctaaaagttgtct |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
34646260 |
catttctcgatattaatgtagtggtgatgagattatttctcccatctttgatacttaaagctttcaggtgaatatgatacccttattctaaaagttgtct |
34646161 |
T |
|
| Q |
222 |
cgaacttgaaatagtgaaagtagtaaatatttaaagaaaattgatgtcttcgacatttcaagagaattaagatattgcctttgccttttattggaatctt |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
34646160 |
cgaacttgaaatagtgaaagtagtaaatatttaaagaaaattgatgtcttccacattttaagagaattaagatattgcccttgccttttattggaatctt |
34646061 |
T |
|
| Q |
322 |
ggaatcgtcgacaaatgagacaattccacttaatgattcatcaagtttcacgaacatgctcctatttccacacatatggttgcttgcaccagtgtcaata |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34646060 |
ggaatcgtcgacaaatgagacaattccacttaatgattcatcaagttttacgaacatgctcctatttccacacatatggttgcttgcacgagtgtcaata |
34645961 |
T |
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| Q |
422 |
taccatgaattttgtaaggttcctt |
446 |
Q |
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| T |
34645960 |
taccatgaattttgtaaggttcctt |
34645936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 259 - 419
Target Start/End: Original strand, 4890500 - 4890660
Alignment:
| Q |
259 |
aaattgatgtcttcgacatttcaagagaattaagatattgcctttgccttttattggaatcttggaatcgtcgacaaatgagacaattccacttaatgat |
358 |
Q |
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|||||||||||||| | ||||||| ||||||||||||| | |||| ||| | ||||||||||||||| ||| ||||||||||| | |||| | |||| |
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| T |
4890500 |
aaattgatgtcttccatctttcaagcgaattaagatattacatttgtttttcactggaatcttggaatcatcgccaaatgagacattgccacacactgat |
4890599 |
T |
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| Q |
359 |
tcatcaagtttcacgaacatgctcctatttccacacatatggttgcttgcaccagtgtcaa |
419 |
Q |
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| T |
4890600 |
tcatcaagctctacaaacatgctccttttcccacacatatgattgcttgcaccagtgtcaa |
4890660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 403
Target Start/End: Complemental strand, 40846394 - 40846297
Alignment:
| Q |
306 |
cttttattggaatcttggaatcgtcgacaaatgagacaattccacttaatgattcatcaagtttcacgaacatgctcctatttccacacatatggttg |
403 |
Q |
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|||| ||| ||| ||||| ||| ||| ||||||||||| | ||||||| |||||||||||| | ||| ||||| ||||| ||| |||||||||||||| |
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| T |
40846394 |
ctttcattagaaccttgggatcatcgccaaatgagacattgccacttactgattcatcaagctccacaaacattctccttttttcacacatatggttg |
40846297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 5744 - 5671
Alignment:
| Q |
19 |
aaaatttaagtacctaaatcaaagatggcaaagccatggtgcaccattgtagcaagctttgagacgtttttcca |
92 |
Q |
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||||||||| |||| |||| |||||| |||| ||||| || | |||||||||||||||||| || |||||||| |
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| T |
5744 |
aaaatttaactacccaaatggaagatgtcaaaaccatgatggatcattgtagcaagctttgatacatttttcca |
5671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 25662223 - 25662296
Alignment:
| Q |
19 |
aaaatttaagtacctaaatcaaagatggcaaagccatggtgcaccattgtagcaagctttgagacgtttttcca |
92 |
Q |
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||||||||| |||| |||| |||||| |||| ||||| || | |||||||||||||||||| || |||||||| |
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| T |
25662223 |
aaaatttaactacccaaatggaagatgtcaaaaccatgatggatcattgtagcaagctttgatacatttttcca |
25662296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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