View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_10 (Length: 379)
Name: NF10521_low_10
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 36286585 - 36286226
Alignment:
| Q |
1 |
aaaaagaatcaacccagctgctggttagcttcagtgagaaagtatttttacctttttctactagttttccttgatgaataacggctatagtagcggcatt |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36286585 |
aaaatgaatcaacccagctgctggttagcttcagtgagaaagtatttttacctttttctactagttttccttgatgaataacggctatagtagcggcatt |
36286486 |
T |
|
| Q |
101 |
tcttacagtacttaagcggtgggcaacaataacagtagttctgtttatcatgattttgtctagtgcctcctgtactattttttcagattccacatcaagg |
200 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36286485 |
tcttacagtacttaagcggtgggccacaataacagtagttctgtttatcatgattttgtctagtgcctcctgtactattttttcagattccacatcaagg |
36286386 |
T |
|
| Q |
201 |
gcactagtagcctcatcaagaagaagaattcttggatcttttaaaattgatctagctatagcaactctctgcttttgaccccctgagagctgcattccgc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36286385 |
gcactagtagcctcatcaagaagaagaattcttggatcttttaaaattgatctagctatagcaactctctgcttttgaccccctgagagctgcattccgc |
36286286 |
T |
|
| Q |
301 |
gttcacctatcattgtatcgagcccctaaattttgttttgcaaaattagtaaggttaaag |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36286285 |
gttcacctatcattgtatcgagcccctaaattttgttttgcaaaattagtaaggttaaag |
36286226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 277
Target Start/End: Original strand, 49736719 - 49736947
Alignment:
| Q |
49 |
tacctttttctactagttttccttgatgaataacggctatagtagcggcatttcttacagtacttaagcggtgggcaacaataacagtagttctgtttat |
148 |
Q |
| |
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||||||||||||||| ||||||||| ||||||||||| || || | ||||| |||| || |||| ||||||||| ||||| | | |||| |||||| |
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| T |
49736719 |
tacctttttctactacttttccttggtgaataacggcaatgatatcagcattccttattgtgcttaggcggtgggctacaatgatcattgttcggtttat |
49736818 |
T |
|
| Q |
149 |
catgattttgtctagtgcctcctgtactattttttcagattccacatcaagggcactagtagcctcatcaagaagaagaattcttggatcttttaaaatt |
248 |
Q |
| |
|
||| ||| | ||||| | ||| ||||| | | |||| || || | ||||||||||| || || ||||| || || ||||||||||||||||| | |||| |
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|
| T |
49736819 |
cataattctttctagcgtctcttgtaccactctttccgactctgcgtcaagggcacttgttgcttcatctaggagtagaattcttggatctttcagaatt |
49736918 |
T |
|
| Q |
249 |
gatctagctatagcaactctctgcttttg |
277 |
Q |
| |
|
| ||| |||||||| | ||| |||||||| |
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| T |
49736919 |
gctcttgctatagctattctttgcttttg |
49736947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 49 - 298
Target Start/End: Complemental strand, 51146230 - 51145981
Alignment:
| Q |
49 |
tacctttttctactagttttccttgatgaataacggctatagtagcggcatttcttacagtacttaagcggtgggcaacaataacagtagttctgtttat |
148 |
Q |
| |
|
||||| |||| |||| ||||||||||||||| || || || ||| | ||||||||| ||| || |||||||| || |||| | ||| || | |||||| |
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|
| T |
51146230 |
tacctctttcaactatttttccttgatgaatgacagcaattgtatcaacatttcttatagtgctcaagcggtgtgctacaacgatagtcgtccggtttat |
51146131 |
T |
|
| Q |
149 |
catgattttgtctagtgcctcctgtactattttttcagattccacatcaagggcactagtagcctcatcaagaagaagaattcttggatcttttaaaatt |
248 |
Q |
| |
|
||| ||| ||| | |||||| ||||| ||| | |||||||| ||||||||||||| ||||| ||||||||||| || |||||||||||||| |||||| |
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|
| T |
51146130 |
cattattctgttcaatgcctcttgtacaattctctcagattctgcatcaagggcacttgtagcttcatcaagaagtaggattcttggatctttcaaaatt |
51146031 |
T |
|
| Q |
249 |
gatctagctatagcaactctctgcttttgaccccctgagagctgcattcc |
298 |
Q |
| |
|
| ||| || || |||||||||||||||||||| || ||||||||| |||| |
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|
| T |
51146030 |
gctcttgcaattgcaactctctgcttttgacctccagagagctgcgttcc |
51145981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 48 - 277
Target Start/End: Complemental strand, 51213329 - 51213100
Alignment:
| Q |
48 |
ttacctttttctactagttttccttgatgaataacggctatagtagcggcatttcttacagtacttaagcggtgggcaacaataacagtagttctgttta |
147 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| || || || | || || |||| || |||| |||||| || ||||| | || |||| ||||| |
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|
| T |
51213329 |
ttacctttttctactacttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggttta |
51213230 |
T |
|
| Q |
148 |
tcatgattttgtctagtgcctcctgtactattttttcagattccacatcaagggcactagtagcctcatcaagaagaagaattcttggatcttttaaaat |
247 |
Q |
| |
|
|||| ||| |||| || | ||| ||||||| | |||||||||| ||||||||||||| || || |||||||| || ||||||||||||||||| | ||| |
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|
| T |
51213229 |
tcataattctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgttgcttcatcaaggagtagaattcttggatctttcagaat |
51213130 |
T |
|
| Q |
248 |
tgatctagctatagcaactctctgcttttg |
277 |
Q |
| |
|
|| ||| |||||||||| ||| |||||||| |
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|
| T |
51213129 |
tgctcttgctatagcaattctttgcttttg |
51213100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 97 - 292
Target Start/End: Complemental strand, 51157304 - 51157109
Alignment:
| Q |
97 |
catttcttacagtacttaagcggtgggcaacaataacagtagttctgtttatcatgattttgtctagtgcctcctgtactattttttcagattccacatc |
196 |
Q |
| |
|
||||||||| |||||||||||||| || |||| | ||| || | ||||||||| ||| | || | |||||| ||||| ||| | |||||||| |||| |
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|
| T |
51157304 |
catttcttattgtacttaagcggtgagctacaacgatagttgtccggtttatcattattctctccaatgcctcttgtacaattctctcagattctgcatc |
51157205 |
T |
|
| Q |
197 |
aagggcactagtagcctcatcaagaagaagaattcttggatcttttaaaattgatctagctatagcaactctctgcttttgaccccctgagagctg |
292 |
Q |
| |
|
||||||||| ||||| ||||||||||| || ||||| || ||||| ||||||| ||| || || |||||||| ||||||||||| || |||||||| |
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|
| T |
51157204 |
aagggcacttgtagcttcatcaagaagtaggattctcgggtctttcaaaattgctcttgcaattgcaactctttgcttttgacctccagagagctg |
51157109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 65 - 292
Target Start/End: Complemental strand, 51200150 - 51199923
Alignment:
| Q |
65 |
ttttccttgatgaataacggctatagtagcggcatttcttacagtacttaagcggtgggcaacaataacagtagttctgtttatcatgattttgtctagt |
164 |
Q |
| |
|
||||||||||||||||||||| || ||| | ||||| ||| ||||| || ||||| || ||||| ||||| |||| ||||| ||| | | | || | | |
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|
| T |
51200150 |
ttttccttgatgaataacggcaatggtatcagcattctttattgtactcaaacggtgagctacaatcacagttgttcggtttaccattactctatccaat |
51200051 |
T |
|
| Q |
165 |
gcctcctgtactattttttcagattccacatcaagggcactagtagcctcatcaagaagaagaattcttggatcttttaaaattgatctagctatagcaa |
264 |
Q |
| |
|
||||| ||||| ||| | |||||||| ||||||| ||||| ||||| ||||| ||||| | |||||||||||||| | ||| | ||| ||||| |||| |
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|
| T |
51200050 |
gcctcttgtacaattctctcagattcagcatcaagcgcacttgtagcttcatcgagaagtaatattcttggatctttcagaatcgctcttgctattgcaa |
51199951 |
T |
|
| Q |
265 |
ctctctgcttttgaccccctgagagctg |
292 |
Q |
| |
|
||||||||||||| ||||| |||||||| |
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|
| T |
51199950 |
ctctctgcttttgtcccccagagagctg |
51199923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 143 - 298
Target Start/End: Original strand, 29936914 - 29937069
Alignment:
| Q |
143 |
gtttatcatgattttgtctagtgcctcctgtactattttttcagattccacatcaagggcactagtagcctcatcaagaagaagaattcttggatctttt |
242 |
Q |
| |
|
||||||||| ||| | || | |||||| ||||| ||| | |||||||| ||||||||||||| ||||| ||||||||||| | |||||||| ||||| |
|
|
| T |
29936914 |
gtttatcattattctttccaatgcctcttgtacaattctctcagattctgcatcaagggcacttgtagcttcatcaagaagtaagattcttgggtctttc |
29937013 |
T |
|
| Q |
243 |
aaaattgatctagctatagcaactctctgcttttgaccccctgagagctgcattcc |
298 |
Q |
| |
|
||||||| ||| || || |||||||| |||||||| || || ||||| || ||||| |
|
|
| T |
29937014 |
aaaattgctcttgcaattgcaactctttgcttttgtcctccagagagttgtattcc |
29937069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 38525276 - 38525332
Alignment:
| Q |
181 |
tttcagattccacatcaagggcactagtagcctcatcaagaagaagaattcttggat |
237 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
38525276 |
tttcagattctgcatcaagtgcacttgtagcttcatcaagaagtagaattcttggat |
38525332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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