View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_13 (Length: 354)
Name: NF10521_low_13
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_13 |
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| [»] scaffold0418 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 7664379 - 7664090
Alignment:
| Q |
18 |
taactaaggtgtactagctaggattggatacaaagaattagtagtgatgtgatatagcttaagctgcaagtaactatgtgtatctaaataattaggagta |
117 |
Q |
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| T |
7664379 |
taactaaggtgtactagctaggattggatacaaaaaattagtagtgatgtgatatagcttaagctgcaagtaactatgtgtatctaaataattaggagta |
7664280 |
T |
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| Q |
118 |
gacctatttatgtaatacttcgaaatctaaccaatgctgacttaatctaatctaattagagttaagctaactagttaattagagtacgttttttcgataa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7664279 |
gacctatttatgtaatacttcgaaatctaaccaatgctgacttaatctaatctaattagagttaagctaactagttaattagagtacgttttttcaataa |
7664180 |
T |
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| Q |
218 |
taatagttaattagagtctgttattcagttgtctttatatatatttactcttttatgttgtggtgagtcactgagttgacttatatatata |
308 |
Q |
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| T |
7664179 |
taatagttaattagagtctgttattcagttgtctttatatatatttactc-tttatgttgtggtgactcactgagttgacttatatatata |
7664090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 7664053 - 7664003
Alignment:
| Q |
299 |
tatatatatactcttaaataagtatatattttttcggatccaaagaggtct |
349 |
Q |
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| T |
7664053 |
tatatatatactcttaaataagtatatattttttcggatccaaagaggtct |
7664003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0418 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0418
Description:
Target: scaffold0418; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 7001 - 7051
Alignment:
| Q |
299 |
tatatatatactcttaaataagtatatattttttcggatccaaagaggtct |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7001 |
tatatatatactcttaaataagtatatattttttcggatccaaagaggtct |
7051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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