View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_15 (Length: 343)
Name: NF10521_low_15
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 329
Target Start/End: Complemental strand, 14521077 - 14520767
Alignment:
| Q |
19 |
gtaaagggacacaaagttattgtaatggtgatttttatgatggagaatggaaaaaagggttgcaaaatggacatgggaggtatcaatggaagaatgggaa |
118 |
Q |
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| T |
14521077 |
gtaaagggacacaaagttattgtaatggtgatttttatgatggagaatggaaaaaagggttgcaaaatggacatgggaggtatcaatggaagaatgggaa |
14520978 |
T |
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| Q |
119 |
tcattatattggtcaatggaggaatggtttgtttgatggaaatggtactttgatgtggcaaaatgggaatagatatgatggttgttgggaagaaggtttt |
218 |
Q |
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| T |
14520977 |
tcattatattggtcaatggaggaatggtttgtttgatggaaatggtactttgatgtggcaaaatgggaatagatatgatggttgttgggaagaaggtttt |
14520878 |
T |
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| Q |
219 |
cctaaagggaatggtacatttaggtggagtgatggtagtttttatgttggtatttggagtaaagattcaaaggaacaaagtggtacttattatccttctt |
318 |
Q |
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| T |
14520877 |
cctaaagggaatggtacatttaggtggagtgatggtagtttttatgttggtatttggagtaaagattcaaaggaacaaagtggtacttattatccttctt |
14520778 |
T |
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| Q |
319 |
ctggtgattcc |
329 |
Q |
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| T |
14520777 |
ctggtgattcc |
14520767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 41 - 313
Target Start/End: Original strand, 4193097 - 4193369
Alignment:
| Q |
41 |
taatggtgatttttatgatggagaatggaaaaaagggttgcaaaatggacatgggaggtatcaatggaagaatgggaatcattatattggtcaatggagg |
140 |
Q |
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| T |
4193097 |
taatggtgatttttatgatggtgagtggaaaaagggtgtgcaaaatggacatggtaggtatcaatggaaaaatgggaaccattatattggtcaatggagg |
4193196 |
T |
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| Q |
141 |
aatggtttgtttgatggaaatggtactttgatgtggcaaaatgggaatagatatgatggttgttgggaagaaggttttcctaaagggaatggtacattta |
240 |
Q |
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| T |
4193197 |
aatggtttgtttaatgggaatggtacaatgatgtggcaaaatgggaataggtatgatggttgttgggaaaatggttttccgaaagggaatggtacgttta |
4193296 |
T |
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| Q |
241 |
ggtggagtgatggtagtttttatgttggtatttggagtaaagattcaaaggaacaaagtggtacttattatcc |
313 |
Q |
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| T |
4193297 |
ggtggtctgatggtagtttttatgtcggtgtttggagtaaagatccgaaagaacaaactggtacttattatcc |
4193369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 180 - 317
Target Start/End: Complemental strand, 19642819 - 19642682
Alignment:
| Q |
180 |
aatgggaatagatatgatggttgttgggaagaaggttttcctaaagggaatggtacatttaggtggagtgatggtagtttttatgttggtatttggagta |
279 |
Q |
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| T |
19642819 |
aatgggaataggtatgatggctattgggaagatggtttgcctaaagggaatggaactttcaaatggggtgatggaagtttttatgtaggtaattggagta |
19642720 |
T |
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| Q |
280 |
aagattcaaaggaacaaagtggtacttattatccttct |
317 |
Q |
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| T |
19642719 |
aggatccaagagatcaaagtggaacatattatccttct |
19642682 |
T |
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