View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_16 (Length: 334)
Name: NF10521_low_16
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 32680369 - 32680060
Alignment:
| Q |
18 |
cgttgaatttcaacaaccttcgttgagctttcttaattctctactcagttcagcgacaactgcacttgaaagggcagctgaagagaaatccttattaccg |
117 |
Q |
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| T |
32680369 |
cgttgaatttcaacaaccttcgttgtgctttcttaattctctactcagttcagcgacaactgcacttgaaagggcagctgaagagaaatccttattactg |
32680270 |
T |
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| Q |
118 |
aacaaggtgaaaattgaaaactaatttgtctgtctttgtagtgctttggtttacattgtcagatactccctctgatccttttaataagagacaaatgagt |
217 |
Q |
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| T |
32680269 |
aacaaggtgaaaattgaaaactaatttgtctgtctttgtagtgctttggtttacattgtcagatactccctctaatccttttaataggagacaaatgagt |
32680170 |
T |
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| Q |
218 |
caatcagagttttcctcgatccacgattgacaacataggttttgaaagcttctcaatcaagggaatttataccaaaatattaagactttttattgtagcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32680169 |
caatcagagttttcctcgatccacgattgacaacataggttttgaaagcttctcaatcaagggaatttataccaaaatattaagactttttattgtagcc |
32680070 |
T |
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| Q |
318 |
ctctctgctt |
327 |
Q |
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|||| ||||| |
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| T |
32680069 |
ctctgtgctt |
32680060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 40117043 - 40116880
Alignment:
| Q |
19 |
gttgaatttcaacaaccttcgttgagctttcttaattctctactcagttcagcgacaactgcacttgaaagggcagctgaagagaaatccttattaccga |
118 |
Q |
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| T |
40117043 |
gttgaatttcaacaaccttcattgagcttgcttaattctttactcagttcagctacaactgcactggaaagagcagccgaggagaaatccttattactga |
40116944 |
T |
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| Q |
119 |
acaaggtgaaaattgaaaactaatttgtctgtctttgtagtgctttggtttacattgtcagata |
182 |
Q |
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||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||| |||| |
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| T |
40116943 |
acaaggtgaaaattgaaaactgatttgttcgtctttctagtgctttggtttacattgtctgata |
40116880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 44806374 - 44806454
Alignment:
| Q |
236 |
atccacgattgacaacataggttttgaaagcttctcaatcaagggaatttataccaaaatattaagactttttattgtagc |
316 |
Q |
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|||||| |||||||||||||||||||||||||||| ||| |||||||||||||| ||| |||||||||||| ||||||| |
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| T |
44806374 |
atccactattgacaacataggttttgaaagcttctgaattaagggaatttatacgaaatcattaagacttttccttgtagc |
44806454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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