View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10521_low_17 (Length: 324)
Name: NF10521_low_17
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 91 - 305
Target Start/End: Original strand, 48172252 - 48172466
Alignment:
| Q |
91 |
ttaagggcaaatcattcgggaatcacaagttagaatcctggttgaatcaataattaaccagagttccgactgaactctagattaccaagggcccttaccg |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48172252 |
ttaagggcaaatcattcgggaatcacaagttagaatcctggttgaatcaataattaaccagagttccgactgaactctagattaccaaaggcccttaccg |
48172351 |
T |
|
| Q |
191 |
ttggaatcggagagttaaaacacnnnnnnnccccataatcatctcatattgtattttattttatataggacaaaaagtaatattgaaaagagattgctat |
290 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48172352 |
ttggaatcggagagttaaaacacaaaaaaactccataatcatctcatattgtattttattttatataggacaaaaagtaatgttgaaaagagattgctat |
48172451 |
T |
|
| Q |
291 |
agtttgtgtacccat |
305 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
48172452 |
agtttgtgtacccat |
48172466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 48172190 - 48172245
Alignment:
| Q |
1 |
taaaatattagtttatatcatactggagaaattgcacttaggaaagctcccaaaat |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48172190 |
taaaatattagtttatatcatactggagaaattgcacttaggaaagctcccaaaat |
48172245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University