View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10521_low_19 (Length: 301)

Name: NF10521_low_19
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10521_low_19
NF10521_low_19
[»] chr1 (3 HSPs)
chr1 (15-297)||(40795636-40795918)
chr1 (27-297)||(41670267-41670537)
chr1 (38-175)||(29391455-29391592)
[»] chr7 (1 HSPs)
chr7 (36-297)||(40180420-40180681)
[»] chr4 (11 HSPs)
chr4 (15-193)||(26433995-26434173)
chr4 (27-193)||(34662182-34662348)
chr4 (15-196)||(23402042-23402223)
chr4 (15-193)||(23885798-23885976)
chr4 (15-193)||(26832706-26832884)
chr4 (15-190)||(23415838-23416013)
chr4 (15-193)||(23453501-23453679)
chr4 (15-196)||(23868700-23868881)
chr4 (15-193)||(26435775-26435953)
chr4 (15-196)||(23408669-23408850)
chr4 (15-193)||(24307194-24307372)
[»] chr8 (1 HSPs)
chr8 (42-188)||(29684676-29684822)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 40795918 - 40795636
Alignment:
Q  15 ttgtatcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgt 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| || ||||    
T  40795918 ttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccatagccttgctggagattccaatgt 40795819  T
Q  115 caggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtcggcagaggaagcttcctt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40795818 caggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtcggcagaggaagcttcctt 40795719  T
Q  215 tgggatcttcttctccgctttggttttctctgcgggagctttttctgctggcttcttctcagcgggcttcttctctccctttg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40795718 tgggatcttcttctccgctttggttttctctgcgggagctttttctgctggcttcttctcagcgggcttcttctctccctttg 40795636  T

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Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 27 - 297
Target Start/End: Complemental strand, 41670537 - 41670267
Alignment:
Q  27 agtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacct 126  Q
    |||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  41670537 agtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaatgtcaggatgaacct 41670438  T
Q  127 gcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtcggcagaggaagcttcctttgggatcttctt 226  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||  ||||| ||||||||||||||||||||    
T  41670437 gcttgagaaccttgaagatgtagatcttgtaggtttcaacgctcttcttgtttctcttcttcttcttgtcggtggaggatgcttcctttgggatcttctt 41670338  T
Q  227 ctccgctttggttttctctgcgggagctttttctgctggcttcttctcagcgggcttcttctctccctttg 297  Q
     || ||||||||||||||||| || || || ||||||||||||||||| ||||| ||||||||||||||||    
T  41670337 ttcggctttggttttctctgctggcgccttctctgctggcttcttctcggcgggtttcttctctccctttg 41670267  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 29391592 - 29391455
Alignment:
Q  38 ttcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaacc 137  Q
    |||||||||||| |||||||| || |||||||||||||||||||| || |||||||| |||   || ||||| || |||||||||||||| |||||||||    
T  29391592 ttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatacctatatcaggatgaacctgtttgagaacc 29391493  T
Q  138 ttgaagatgtagatcttgtaggtttctacgctcttctt 175  Q
    ||||||||||| ||||| |||||||| |||||||||||    
T  29391492 ttgaagatgtaaatcttataggtttcaacgctcttctt 29391455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 36 - 297
Target Start/End: Original strand, 40180420 - 40180681
Alignment:
Q  36 gattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaa 135  Q
    |||||||||||||| |||||||| || || || ||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| || ||||    
T  40180420 gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa 40180519  T
Q  136 ccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtcggcagaggaagcttcctttgggatcttcttctccgc-tt 234  Q
    ||||||||||||| |||||||||||||| ||||| |||||  ||||||| ||||||||||||     |    ||||||||| ||||||||||||||| ||    
T  40180520 ccttgaagatgtatatcttgtaggtttcaacgcttttcttcgttctcttcttcttcttgtcg---ctgcttccttcctttgagatcttcttctccgcttt 40180616  T
Q  235 tggtt--ttctctgcgggagctttttctgctggcttcttctcagcgggcttcttctctccctttg 297  Q
    |||||  ||||| || |||||||| ||||| ||||||||||| ||||| ||||||||| ||||||    
T  40180617 tggtttcttctcggctggagctttctctgcgggcttcttctccgcgggtttcttctctgcctttg 40180681  T

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Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 26434173 - 26433995
Alignment:
Q  15 ttgtatcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgt 114  Q
    ||||| ||||| |||||||||||||| |||||||| ||||| || || ||||||||||||||||||||||| ||||| || |||||||||||||| ||||    
T  26434173 ttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgt 26434074  T
Q  115 caggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt 193  Q
    | |||||||| || || |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||    
T  26434073 ctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttcttcttctt 26433995  T

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Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 27 - 193
Target Start/End: Original strand, 34662182 - 34662348
Alignment:
Q  27 agtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacct 126  Q
    |||||||| ||||| |||||||||||||| || || |||||||||||||||||||| || ||||| || |||||||||||||| |||||||| ||||| |    
T  34662182 agtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaactt 34662281  T
Q  127 gcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt 193  Q
    | || |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  34662282 gtttcagaaccttgaagatgtagatcttgtaggtttcaacgctcttcttgtttctcttcttcttctt 34662348  T

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Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 23402223 - 23402042
Alignment:
Q  15 ttgtatcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgt 114  Q
    ||||| ||||| |||||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  23402223 ttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgt 23402124  T
Q  115 caggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtc 196  Q
    | || ||||||||||| ||||| |||||||||||||||||||| ||||||||  |||||||  ||||||| |||||||||||    
T  23402123 ctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctacattcttcttacttctcttcttcttcttgtc 23402042  T

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Target: chr4; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 23885976 - 23885798
Alignment:
Q  15 ttgtatcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgt 114  Q
    ||||| ||||| |||||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  23885976 ttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgt 23885877  T
Q  115 caggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt 193  Q
    | || ||||||||||| ||||| |||||||||||||||||||| ||||| ||  |||||||| ||||||| ||||||||    
T  23885876 ctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttcttcttctt 23885798  T

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Target: chr4; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 26832884 - 26832706
Alignment:
Q  15 ttgtatcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgt 114  Q
    ||||| ||||| |||||||||||||| |||||||| ||||| || || ||||||||||||||||||||||| ||||| || |||||||||||||| ||||    
T  26832884 ttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgt 26832785  T
Q  115 caggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt 193  Q
    | || ||||| || || |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||    
T  26832784 ctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttcttcttctt 26832706  T

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Target: chr4; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 23415838 - 23416013
Alignment:
Q  15 ttgtatcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgt 114  Q
    ||||| ||||| |||||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  23415838 ttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgt 23415937  T
Q  115 caggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttctt 190  Q
    | || ||||||||||| ||||| |||||||||||||||||||| ||||| ||  |||||||| ||||||| |||||    
T  23415938 ctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttcttctt 23416013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 23453501 - 23453679
Alignment:
Q  15 ttgtatcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgt 114  Q
    ||||| ||||| |||||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  23453501 ttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgt 23453600  T
Q  115 caggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt 193  Q
    | || ||||| || || ||||| |||||||||||||||||||| ||||||||  |||||||| ||||||| ||||||||    
T  23453601 ctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctacattcttcttgcttctcttcttcttctt 23453679  T

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Target: chr4; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 23868881 - 23868700
Alignment:
Q  15 ttgtatcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgt 114  Q
    ||||| ||||| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||| |||||||| || |||||||||||||| ||||    
T  23868881 ttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgt 23868782  T
Q  115 caggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtc 196  Q
    | || ||||||||||| ||||| |||||||||||||||||||| ||||| ||  |||||||| ||||||| |||||||||||    
T  23868781 ctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttcttcttcttgtc 23868700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 26435953 - 26435775
Alignment:
Q  15 ttgtatcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgt 114  Q
    ||||| ||||| |||||||| ||||| |||| ||| ||||| || || ||||||||||||||||||||||| ||||| || |||||||||||||| ||||    
T  26435953 ttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgt 26435854  T
Q  115 caggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt 193  Q
    | || ||||| || || |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||    
T  26435853 ctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttcttcttctt 26435775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 23408669 - 23408850
Alignment:
Q  15 ttgtatcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgt 114  Q
    ||||| ||||| |||||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| || |||||||||||||| ||||    
T  23408669 ttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatcgctttgcttgagataccaatgt 23408768  T
Q  115 caggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtc 196  Q
    | || ||||| || || ||||| |||||||||||||||||||| ||||||||  |||||||  ||||||| |||||||||||    
T  23408769 ctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctacattcttcttacttctcttcttcttcttgtc 23408850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 24307372 - 24307194
Alignment:
Q  15 ttgtatcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgt 114  Q
    ||||| ||||| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||| |||||||| || |||||||||||||| ||||    
T  24307372 ttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgt 24307273  T
Q  115 caggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt 193  Q
    | || ||||| || || |||||||||||||| ||||||||||| ||||| ||  |||||||| ||||||| ||||||||    
T  24307272 ctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttcaacattcttcttgcttctcttcttcttctt 24307194  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 188
Target Start/End: Complemental strand, 29684822 - 29684676
Alignment:
Q  42 tgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttga 141  Q
    |||||||| |||| ||| || || || | ||||||||| || | ||||||||| || ||||| | ||| ||| |||||||||| || |||||||||||||    
T  29684822 tgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaaccttga 29684723  T
Q  142 agatgtagatcttgtaggtttctacgctcttcttgtttctctttttc 188  Q
    | || || |||||||||||||| | ||| |||||   ||||||||||    
T  29684722 atatatatatcttgtaggtttcaatgcttttctttgatctctttttc 29684676  T

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