View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_2 (Length: 437)
Name: NF10521_low_2
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 12088067 - 12088273
Alignment:
| Q |
1 |
acaacgacaaagggatgaaaatacatttcagaacatatgatcagaacatatgaagcaacataaaataacaacagcatacaatcatttcaccattagcatc |
100 |
Q |
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| T |
12088067 |
acaacgacaaaggggtgaaaatacatttcaaaacatatgatcagaacagatgaaacaacataaaataacaacagcatacaatcatttcaccattagcatc |
12088166 |
T |
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| Q |
101 |
aacgttcatacacatcattcacaagatcaattactatcaaaacatcatcacgtatatgcgagaatgcaactctttcctatcacctatatgcataccggta |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||| |||| |
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| T |
12088167 |
aacgttcatacacatcattcacaacatcaattactatcaaaacatcatcatgtatatacgagaatgcaactctttcctatcacctatatatatactggta |
12088266 |
T |
|
| Q |
201 |
tcggttt |
207 |
Q |
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||||||| |
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| T |
12088267 |
tcggttt |
12088273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 227 - 412
Target Start/End: Original strand, 12088452 - 12088639
Alignment:
| Q |
227 |
ttatattcctgagcaatacaacacatcacgaatcatcacctgaattctaattatg--atgatgcatgaagactcaccatatatagacaacaacaattcat |
324 |
Q |
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|||| |||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12088452 |
ttatgttcctgagcaatacaacacatcaccaatcatcaccaaaattctaattatgttatgatgcatgaagactcaccatatataaacaacaacaattcat |
12088551 |
T |
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| Q |
325 |
cacaaatgttcatcaccctaagacttttatttaacttcaccatttattatcaccgtaatattcatttatcatcaccaataatcatcaa |
412 |
Q |
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| T |
12088552 |
cacaaatattcatcaccctaagacttttatttagcatcaccatttattatcaccgtaatattaatttatcatcaccaataatcatcaa |
12088639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 24562825 - 24562893
Alignment:
| Q |
153 |
tatatgcgagaatgcaactctttcctatcacctatatgcataccggtatcggtttctactcatcaaaat |
221 |
Q |
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| T |
24562825 |
tatatgcgaagatgcaactctttcctaacacctatatgcatgccggtatcggtatctactcaacaaaat |
24562893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 24603859 - 24603927
Alignment:
| Q |
153 |
tatatgcgagaatgcaactctttcctatcacctatatgcataccggtatcggtttctactcatcaaaat |
221 |
Q |
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| T |
24603859 |
tatatgcgaagatgcaactctttcctaacacctatatgcatgccggtatcggtatctactcaacaaaat |
24603927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 17445945 - 17446000
Alignment:
| Q |
138 |
caaaacatcatcacgtatatgcgagaatgcaactctttcctatcacctatatgcat |
193 |
Q |
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| T |
17445945 |
caaaatatcatcatgtatatgcgaagatgcaactctttcctaacacccatatgcat |
17446000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 8885819 - 8885876
Alignment:
| Q |
164 |
atgcaactctttcctatcacctatatgcataccggtatcggtttctactcatcaaaat |
221 |
Q |
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| T |
8885819 |
atgcaactccttcctatcacccatatgcataccggtaccggtctctactcaccaaaat |
8885876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 977343 - 977426
Alignment:
| Q |
138 |
caaaacatcatcacgtatatgcgagaatgcaactctttcctatcacctatatgcataccggtatcggtttctactcatcaaaat |
221 |
Q |
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| T |
977343 |
caaaatatcatgatgtatatgcaaagatgtaactctttcctaacacctatatgcatgccggtatcgatctctactcaccaaaat |
977426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 20410244 - 20410110
Alignment:
| Q |
40 |
atcagaacatatgaagcaacataaaataacaacagcatacaatcatttcaccattagcatcaacgttcatacacatcattcacaagatcaattactatca |
139 |
Q |
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||||||| | || ||||||||| ||||||||||| |||| |||||| || |||||| || || || | |||||||||||||| |||||||||||| |
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| T |
20410244 |
atcagaatagataaagcaacatgaaataacaacaacataaaatcat--catcattagtattcacactcgtgcacatcattcacaatgtcaattactatc- |
20410148 |
T |
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| Q |
140 |
aaacatcatcacgtatatgcgagaatgcaactctttcct |
178 |
Q |
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| T |
20410147 |
aaacatcatcatgtatatgctag-atggaactctttcct |
20410110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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