View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_20 (Length: 293)
Name: NF10521_low_20
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_20 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 123177 - 123445
Alignment:
| Q |
16 |
gtaacctcattttttgggaacaattctttgatcttttctatcaaaccttcatcttccttgactgcttgaactgaacaactgtcccaagatggctgccact |
115 |
Q |
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| T |
123177 |
gtaacctcattttttgggaacaattctttgatcttttctatcaaaccttcatcttccttgactgcttgaactgaacaactgtcccaagatggctgccact |
123276 |
T |
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| Q |
116 |
taactttacaaaccaactttctattttccaatcggtccagaagaattggctattccaaaggatttgtgacaccagcctaattgcaagtgttattccaaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
123277 |
taactttacaaaccaactttctattttccaattggtccagatgaattggatattccaaaggatttgtgacaccagcctaattgcaagtgttattccaaaa |
123376 |
T |
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| Q |
216 |
gttgtggataatagattaagactataatataaaaatcaataaatagaaacctcaatcataaccctttgc |
284 |
Q |
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| T |
123377 |
gttgtggataataaattaagactataatataaaaatcaataaatagaaacctcaatcataaccctttgc |
123445 |
T |
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Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 23696963 - 23697143
Alignment:
| Q |
21 |
ctcattttttgggaacaattctttgatcttttctatcaaaccttcatcttccttgactgcttgaactgaacaactgtcccaagatggctgccacttaact |
120 |
Q |
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|||||| ||||||||||||| | ||||||| || |||||||||||||| ||||||| |||||| ||||||||||||||||||| |||||||||||| ||| |
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| T |
23696963 |
ctcattctttgggaacaattatatgatcttctcaatcaaaccttcatcctccttgattgcttgcactgaacaactgtcccaagttggctgccacttcact |
23697062 |
T |
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| Q |
121 |
ttacaaaccaactttctattttccaatcggtccagaagaattggctattccaaaggatttgtgacaccagcctaattgcaa |
201 |
Q |
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| T |
23697063 |
ttacagacgacatttcttttttccaattagtccagtagtattggatattccaatggatttgtgacaccagcctaaatgcaa |
23697143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 22077956 - 22078130
Alignment:
| Q |
19 |
acctcattttttgggaacaattctttgatcttttctatcaaaccttcatcttccttgactgcttgaactgaacaactgtcccaagatggctgccacttaa |
118 |
Q |
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||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||||| |||| |
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| T |
22077956 |
acctcattttttgggaacaatgctttgatcttttcaattaaaccttcatcttccttgattgcttgaaccgaacagctgtcccaagttggctgccatttaa |
22078055 |
T |
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| Q |
119 |
ctttacaaaccaactttctattttccaatcggtccagaagaattggctattccaaaggatttgtgacaccagccta |
194 |
Q |
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||||||||| |||| ||| ||||||||| |||||| | |||| ||||||| ||||||||||||||||||||| |
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| T |
22078056 |
ctttacaaataaactctctgttttccaattggtccaagtgtgttgg-tattccagaggatttgtgacaccagccta |
22078130 |
T |
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