View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_22 (Length: 290)
Name: NF10521_low_22
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_22 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 75055 - 74782
Alignment:
| Q |
1 |
tttcaatgtagtaatgcagtatgaaaaacaacaattatattgtgctcattgtaagatattaggtcataatgttcaaaactgcatgaaactgatctttatt |
100 |
Q |
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| T |
75055 |
tttcaatgtagtaatgcagtatgaaaaacaacaattatattgtgctgattgtaagatattaggtcataatgttcaaaactacatgaaattgatctttatt |
74956 |
T |
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| Q |
101 |
aacacgcaagacactgttcagaaagtttctaagaaacctattcatgatttgaagcaagccaaaactactaaaacagttgctttgagaggtaatcaacctg |
200 |
Q |
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| T |
74955 |
aacacgtaagacactgttcaaaaagttgctaagaaacctactcctgatttgaagcaagccaaaactactaaaacagttgctttgagtggcaagcaacctg |
74856 |
T |
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| Q |
201 |
aaactagtgggaataagcacattccatctgagttaaccaatgatgtgcacaatcctaaagatggtgtgccaagt |
274 |
Q |
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| T |
74855 |
aaactagtgggaataagcacattccatctgagttaaccaatgatgtgcacaatcctaaagatggagtgccaagt |
74782 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 25863702 - 25863642
Alignment:
| Q |
17 |
cagtatgaaaaacaacaattatattgtgctcattgtaagatattaggtcataatgttcaaa |
77 |
Q |
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| T |
25863702 |
cagtatgaaaagcacccattgtattgtgctcattgcaggatgttaggtcatagtgttcaaa |
25863642 |
T |
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