View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_23 (Length: 283)
Name: NF10521_low_23
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 5 - 266
Target Start/End: Complemental strand, 56012672 - 56012411
Alignment:
| Q |
5 |
cctgaaaaaccaaaggagcctgagaagcccaaagaacctgaaaagcccaaggagcctgaaaagcctaaagagcctgagaaacccaaagaaaagcctgcac |
104 |
Q |
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| T |
56012672 |
cctgaaaaaccaaaggagcctgagaagcccaaagaacctgaaaagcccaaggagcctgaaaagcccaaagagcctgagaaacccaaagaaaagcctgcac |
56012573 |
T |
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| Q |
105 |
ctccaccacctgagccgaagcctgaaccaccaaaacaacctgagaagccaaaagaaaaacccgctccgccaccgcagcctatgccggaaccggcacctta |
204 |
Q |
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| T |
56012572 |
ctccaccacctgagccgaagcctgaaccaccaaaacaacctgagaagccaaaagaaaaacccgctccgccaccgcagcctatgccggaaccggcacctta |
56012473 |
T |
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| Q |
205 |
tattccggtgtgtccaccacctatggcagttccaattggagtgtgttgtacgccatgctatg |
266 |
Q |
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| T |
56012472 |
tattccggtgtgtccaccacctatggcagttccaattggagtgtgttgtacgccatgctatg |
56012411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 56012711 - 56012637
Alignment:
| Q |
20 |
gagcctgagaagcccaaagaacctgaaaagcccaaggagcctgaaaagcctaaagagcctgagaaacccaaagaa |
94 |
Q |
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| T |
56012711 |
gagcctgaaaagcccaaagaaccagagaagccaaaaaaccctgaaaaaccaaaggagcctgagaagcccaaagaa |
56012637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 56012756 - 56012691
Alignment:
| Q |
29 |
aagcccaaagaacctgaaaagcccaaggagcctgaaaagcctaaagagcctgagaaacccaaagaa |
94 |
Q |
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||||| |||||||| |||||||||||||| || | ||||| ||||||||||| || ||||||||| |
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| T |
56012756 |
aagcctaaagaaccagaaaagcccaaggaacccgtcaagcccaaagagcctgaaaagcccaaagaa |
56012691 |
T |
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