View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_25 (Length: 282)
Name: NF10521_low_25
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_25 |
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| [»] chr6 (3 HSPs) |
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| [»] chr1 (5 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 18079039 - 18078758
Alignment:
| Q |
1 |
acaacaacaacaccattttggcgccaaagtccatagcttgtttttctcgaccaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtc |
100 |
Q |
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| T |
18079039 |
acaacagcaacaccattttggcgccaaagtccatagcttgtttttctcgatcaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtc |
18078940 |
T |
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| Q |
101 |
gttcaacgaagccattttagcgccaacaccgatagctggtgccacgtcatcaccctccaacggtaccgtctccatcgatgatcatgatcaggaatgagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18078939 |
gttcaacgaagccattttagcgccaacaccgatagctggtgccacgtcatcaccctccaacggtaccgtctccatcgatgatcatgatcaggaatgggtt |
18078840 |
T |
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| Q |
201 |
cgtttaggtccgggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgccattga |
282 |
Q |
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| T |
18078839 |
cgtctaggtccgggactgtgagtctgactttgatttttactgtatatgtgactatgacgctgttctcgtcctccgccattga |
18078758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 18077117 - 18077026
Alignment:
| Q |
18 |
ttggcgccaaagtccatagcttgtttttctcgaccaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtcgttcaacga |
109 |
Q |
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| T |
18077117 |
ttggcgccaacatccatagtttgtttttctcgaccaggaacagattcaacagctgctgccgccacatcatcaccttcaccgtcgttcaacga |
18077026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 18076913 - 18076846
Alignment:
| Q |
212 |
gggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgccat |
279 |
Q |
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| T |
18076913 |
gggaccgtgagtgtgactttgattttcactatatatgtgactatgtggtggttctcttctcccgccat |
18076846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 282
Target Start/End: Complemental strand, 51478443 - 51478336
Alignment:
| Q |
175 |
tcgatgatcatgatcaggaatgagttcgtttaggtccgggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctcc |
274 |
Q |
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| T |
51478443 |
tcgatgatcatgatcaggaatgggttcatctgggtccgggacggtgagtatgactttgattttcactatatacgtgactatgtcattgttctcttcctca |
51478344 |
T |
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| Q |
275 |
gccattga |
282 |
Q |
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|||||||| |
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| T |
51478343 |
gccattga |
51478336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 51454453 - 51454295
Alignment:
| Q |
11 |
caccattttggcgccaaagtccatagcttgtttttctcgaccaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtcgttcaacgaa |
110 |
Q |
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|||| |||||||||||| | ||| ||||||||||||||| ||||| | |||||||| ||||| | ||||||| |||| |||| | || |||||||| |
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| T |
51454453 |
caccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaacgac |
51454354 |
T |
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| Q |
111 |
gccattttagcgccaacaccgatagctggtgccacgtcatcaccctccaacggtaccgt |
169 |
Q |
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| T |
51454353 |
gccgtttcagctccaacaccgacagcttgtgccacgtcaccatcctccaacggtaccgt |
51454295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 51478645 - 51478479
Alignment:
| Q |
1 |
acaacaacaacaccattttggcgccaaagtccatagcttgtttttctcgaccaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtc |
100 |
Q |
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||||||||| |||| |||||| |||| ||||| |||||||| ||||| ||||| || |||||||| || || | ||||||| |||| |||| |||| |
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| T |
51478645 |
acaacaacaccaccgttttgggtccaacatccatgtcttgttttcctcgatcaggaacagattcttcagctacttccaccacgtcatcacgttcatcgtc |
51478546 |
T |
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| Q |
101 |
gttcaacgaagccattttagcgccaacaccgatagctggtgccacgtcatcaccctccaacggtacc |
167 |
Q |
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| T |
51478545 |
cttcaacgacgccgtttcagctccaacaccgatagcttgtgccacatcaccatcctccaacggtacc |
51478479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 51474429 - 51474337
Alignment:
| Q |
17 |
tttggcgccaaagtccatagcttgtttttctcgaccaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtcgttcaacga |
109 |
Q |
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| T |
51474429 |
tttggcgccaacatccatagtttgtttttctcgatcaggaacatattcttcagctgctgctgccacatcatcaccttcaccgtcattcaacga |
51474337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 282
Target Start/End: Complemental strand, 51454259 - 51454154
Alignment:
| Q |
177 |
gatgatcatgatcaggaatgagttcgtttaggtccgggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgc |
276 |
Q |
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|||||||||||||||||||| |||| | | || |||| |||||||||||||||||||| ||| |||| ||| || || |||||||||||||||||| |
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| T |
51454259 |
gatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatataagtgactgtgtggttgttctcttcctccgc |
51454160 |
T |
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| Q |
277 |
cattga |
282 |
Q |
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|||||| |
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| T |
51454159 |
cattga |
51454154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 42431626 - 42431689
Alignment:
| Q |
219 |
tgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgccattga |
282 |
Q |
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| T |
42431626 |
tgagtgtgactttgattttcacaatatatgtggcaatgtcgttgttctcttcctccgccattga |
42431689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 42433456 - 42433379
Alignment:
| Q |
205 |
taggtccgggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgccattga |
282 |
Q |
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|||||| ||||| |||| ||||||||||||| || ||||||| | ||| ||||||||||||||||||||||||| |
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| T |
42433456 |
taggtctgggacaatgagggtgactttgatttgcacaacatatgtgacaatgtcgttgttctcttcctccgccattga |
42433379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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