View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_26 (Length: 278)
Name: NF10521_low_26
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 4819721 - 4819471
Alignment:
| Q |
16 |
attggtggtccagcaatggcagtcattgcattaat----ccatccattgaagtagctgtcgttgatatctcgaaatcgcgtattgcagtgtggcacaaca |
111 |
Q |
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| T |
4819721 |
attggtggtccagcaatggcagtcattgcattaatatgtccatccattgaagtagctgtcgttgatatctcgaaatcgcgtattgcagtgtggcacaaca |
4819622 |
T |
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| Q |
112 |
atcaacttcctatctatgagcccggtcttgatgat--agtaaagcaatgtcgcggcaagagctttttcttcagcattcaagttgaaaaacatgtctacga |
209 |
Q |
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| T |
4819621 |
atcaagttcctatctatgagtccggtcttgatgatgtagtaaagcaatgtcgcggcaagagctttttcttcagcattcaagttgaaaaacatgtctacga |
4819522 |
T |
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| Q |
210 |
agttgaaatagtgtctgtatccgtcaacacgtcgacagtcttggtctttgg |
260 |
Q |
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| T |
4819521 |
agttgaaatagtgtctgtatccgtcaacacgtcgacagttttggtctttgg |
4819471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 50 - 238
Target Start/End: Complemental strand, 10779477 - 10779288
Alignment:
| Q |
50 |
tccatccattgaagtagctgtcgttgatatctcgaaatcgcgtattgcagtgtggcacaacaatcaacttcctatctatgagcccggtcttgatga--ta |
147 |
Q |
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| T |
10779477 |
tccatccattgacgtagcagtggtcgatatctcgaaatcgcgcattgcagtgtggaacaacaatcaacttcctatctatgagcaaaatcttgattatgta |
10779378 |
T |
|
| Q |
148 |
gtaaagcaatgtcgcggcaagagctttttcttcagcattcaagttgaaaaacatgtctacgaagttgaaatagtgtctgtatccgtcaaca |
238 |
Q |
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| T |
10779377 |
gtaaagtaatgtcgcagcaaga-ccttttcttcagcactgatgttgaaaaacatgtctatgaagctaaaattgtgtttgtatttgtcaaca |
10779288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 230
Target Start/End: Complemental strand, 4829482 - 4829301
Alignment:
| Q |
50 |
tccatccattgaagtagctgtcgttgatatctcgaaatcgcgtattgcagtgtggcacaacaatcaacttcctatctatgagcccggtcttgatga--ta |
147 |
Q |
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|||||||| ||||||||| ||||| ||||||| | ||| | | |||||| ||||| ||||| |||||||||| ||||| ||||| ||||||||||| || |
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| T |
4829482 |
tccatccactgaagtagcagtcgtcgatatcttgtaattgagcattgcactgtggaacaaccatcaacttcccatctacgagcctggtcttgatgatgta |
4829383 |
T |
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| Q |
148 |
gtaaagcaatgtcgcggcaagagctttttcttcagcattcaagttgaaaaacatgtctacgaagttgaaatagtgtctgtatc |
230 |
Q |
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| T |
4829382 |
gcaaagcaatttcgtggcaagaac-ttttcttcagctatgatgttaaaaaatatgtctacgaagctgacatagtgtttgtatc |
4829301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 229
Target Start/End: Complemental strand, 4804060 - 4803905
Alignment:
| Q |
76 |
atatctcgaaatcgcgtattgcagtgtggcacaacaatcaacttcctatctatgagcccggtcttgatga--tagtaaagcaatgtcgcggcaagagctt |
173 |
Q |
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| T |
4804060 |
atatctcgaaatcgtgcattgcagccttgaatagcaatcaacttcctatctatgagccaggtattgatgatgtagtaaagcaatgtcgatgcaagtacct |
4803961 |
T |
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| Q |
174 |
tttcttcagcattcaagttgaaaaacatgtctacgaagttgaaatagtgtctgtat |
229 |
Q |
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| T |
4803960 |
tgtcttcaacactgatgttgaaaaacatgtctatgaagctgacattgtgtttgtat |
4803905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 4797949 - 4798069
Alignment:
| Q |
112 |
atcaacttcctatctatgagcccggtcttgatgat--agtaaagcaatgtcgcggcaagagctttttcttcagcattcaagttgaaaaacatgtctacga |
209 |
Q |
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| T |
4797949 |
atcaacttgccatctatgaaccaggtcttgatgatgtagtaaagcaatatcgcggcaagaaccttttcttcagcactgatgttaaaaaacatgtccatga |
4798048 |
T |
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| Q |
210 |
agttgaaatagtgtctgtatc |
230 |
Q |
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|| ||| | ||||| |||||| |
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| T |
4798049 |
agctgacacagtgtttgtatc |
4798069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 4824574 - 4824479
Alignment:
| Q |
69 |
gtcgttgatatctcgaaatcgcgtattgcagtgtggcacaacaatcaacttcctatctatgagcccggtcttgatg--atagtaaagcaatgtcgc |
162 |
Q |
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| T |
4824574 |
gtcgttgatatcacaaaatcgcgcattgtagcatggtacaacgatcaaattcctatctatcagccaggttttgatggtttagtaaagcaatgtcgc |
4824479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 4835791 - 4835691
Alignment:
| Q |
112 |
atcaacttcctatctatgagcccggtcttgatga---------tagtaaagcaatgtcgcggcaagagctttttcttcagcattcaagttgaaaaacatg |
202 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||| | |||| | |||||||||||||| | || ||||||||| |
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| T |
4835791 |
atcaacttcctatctatgagcccgatcttgatgaatgatgatgtagtaaagcaatgtcgcagaaagaaccttttcttcagcattgatgtcaaaaaacatg |
4835692 |
T |
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| Q |
203 |
t |
203 |
Q |
| |
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| T |
4835691 |
t |
4835691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 4815029 - 4814910
Alignment:
| Q |
123 |
atctatgagcccggtcttgatgat--agtaaagcaatgtcgcggcaagagctttttcttcagcattcaagttgaaaaacatgtctacgaagttgaaatag |
220 |
Q |
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||||||||||||| |||||||||| | ||||||||||| || | |||| | ||||||| | ||| | |||||||||||||| || || |||| |||| |
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| T |
4815029 |
atctatgagcccgatcttgatgatgtattaaagcaatgttgctgtaagaaccttttctttggaattgatgttgaaaaacatgtttatgattttgacatag |
4814930 |
T |
|
| Q |
221 |
tgtctgtatccgtcaacacg |
240 |
Q |
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| T |
4814929 |
gttttgtatccgtcaacacg |
4814910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 239
Target Start/End: Complemental strand, 18937667 - 18937574
Alignment:
| Q |
146 |
tagtaaagcaatgtcgcggcaagagctttttcttcagcattcaagttgaaaaacatgtctacgaagttgaaatagtgtctgtatccgtcaacac |
239 |
Q |
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| T |
18937667 |
tagtaaagtaatgtcacggcaaaaaccttttctttagcattgatgttgaaaagcatttctacgaagttgacattgttattgtatccgtcaacac |
18937574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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